Gene detail information of Glyur000398s00034461 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44920.2 | 7.00E-41 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | KHN17899.1 | 9.53E-62 | Thylakoid lumenal 15 kDa protein 1, chloroplastic [Glycine soja] |
| COG | YP_007103357.1 | 2.00E-06 | pentapeptide repeat-containing protein [Pseudanabaena sp. PCC 7367] |
| Swissprot | tr|O22160|TL15A_ARATH | 5.00E-52 | Thylakoid lumenal 15 kDa protein 1, chloroplastic (Precursor) |
| trEMBL | tr|I1LMI2|I1LMI2_SOYBN | 1.00E-64 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G34350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00398 | 162694 | 164732 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.339 |
| SRR1783600 | control | 0.511 |
| SRR1783602 | moderate drought stress | 0.533 |
| SRR1811619 | moderate drought stress | 0.383 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.097 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.171 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.323 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.647 |
| SRR2868004 | Drought Stress (root) | 0.202 |
| SRR2967015 | Control (root) | 0.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.078 |
| SRR9715740 | Leaf | 8.949 |
| SRR9715741 | Leaf | 6.557 |
| SRR9715739 | Root | 0.033 |
| SRR9715742 | Root | 0.123 |
| SRR9715743 | Root | 0.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.457 |
| SRR8749028 | MeJA induced 9h | 0.109 |
| SRR8749029 | MeJA induced 9h | 0.173 |
| SRR8749030 | Uninduced | 0.193 |
| SRR8749031 | Uninduced | 0.121 |
| SRR8749032 | Uninduced | 0.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.357 |
| SRR8400027 | Control - Root | 0.669 |