Gene detail information of Glyur000397s00020479 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10700.1 | 8.00E-146 | phosphoribosyl pyrophosphate (PRPP) synthase 3 |
| NR | XP_003519799.2 | 0 | PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial-like [Glycine max] |
| COG | YP_942352.1 | 4.00E-16 | ribose-phosphate pyrophosphokinase [Psychromonas ingrahamii 37] |
| Swissprot | tr|Q93Z66|KPRS3_ARATH | 0 | Ribose-phosphate pyrophosphokinase 3, chloroplastic (Precursor) |
| trEMBL | tr|I1JC62|I1JC62_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G04310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00397 | 131399 | 135223 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000397s00020479.1 | PF13793.1 | Pribosyltran_N | 99 | 214 | 1.80E-07 |
| Glyur000397s00020479.1 | PF00156.22 | Pribosyltran | 346 | 398 | 5.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.744 |
| SRR1783600 | control | 37.641 |
| SRR1783602 | moderate drought stress | 36.512 |
| SRR1811619 | moderate drought stress | 35.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.317 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.050 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.029 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.522 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.279 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.087 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.028 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.110 |
| SRR2868004 | Drought Stress (root) | 20.293 |
| SRR2967015 | Control (root) | 24.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.910 |
| SRR9715740 | Leaf | 4.438 |
| SRR9715741 | Leaf | 5.433 |
| SRR9715739 | Root | 13.626 |
| SRR9715742 | Root | 13.966 |
| SRR9715743 | Root | 12.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.332 |
| SRR8749028 | MeJA induced 9h | 14.242 |
| SRR8749029 | MeJA induced 9h | 13.340 |
| SRR8749030 | Uninduced | 17.853 |
| SRR8749031 | Uninduced | 12.219 |
| SRR8749032 | Uninduced | 10.646 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.821 |
| SRR8400027 | Control - Root | 28.767 |