Gene detail information of Glyur000397s00020473.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70590.1 | 2.00E-108 | F-box family protein |
| NR | XP_007158409.1 | 0 | hypothetical protein PHAVU_002G150600g [Phaseolus vulgaris] |
| COG | YP_001957953.1 | 1.00E-28 | hypothetical protein Aasi_0854 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q94C27|FB84_ARATH | 6.00E-135 | F-box protein At1g70590 |
| trEMBL | tr|V7CM11|V7CM11_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW30403.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00397 | 91385 | 94785 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000397s00020473.1 | PF08238.7 | Sel1 | 100 | 129 | 0.0045 |
| Glyur000397s00020473.1 | PF08238.7 | Sel1 | 131 | 161 | 0.33 |
| Glyur000397s00020473.1 | PF08238.7 | Sel1 | 162 | 195 | 0.00067 |
| Glyur000397s00020473.1 | PF08238.7 | Sel1 | 197 | 231 | 7.00E-09 |
| Glyur000397s00020473.1 | PF08238.7 | Sel1 | 233 | 267 | 1.80E-07 |
| Glyur000397s00020473.1 | PF08238.7 | Sel1 | 270 | 298 | 1.30E+02 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.512 |
| SRR1783600 | control | 9.510 |
| SRR1783602 | moderate drought stress | 17.574 |
| SRR1811619 | moderate drought stress | 17.370 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.087 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.994 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.749 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.430 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.657 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.975 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.236 |
| SRR2868004 | Drought Stress (root) | 21.647 |
| SRR2967015 | Control (root) | 22.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.650 |
| SRR9715740 | Leaf | 16.255 |
| SRR9715741 | Leaf | 11.529 |
| SRR9715739 | Root | 34.086 |
| SRR9715742 | Root | 25.473 |
| SRR9715743 | Root | 24.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.696 |
| SRR8749028 | MeJA induced 9h | 4.460 |
| SRR8749029 | MeJA induced 9h | 6.179 |
| SRR8749030 | Uninduced | 4.288 |
| SRR8749031 | Uninduced | 2.782 |
| SRR8749032 | Uninduced | 4.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.417 |
| SRR8400027 | Control - Root | 21.616 |