Gene detail

Gene detail information of Glyur000397s00020470.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42490.1	0	Copper amine oxidase family protein
NR	XP_004489782.1	0	PREDICTED: copper methylamine oxidase-like [Cicer arietinum]
COG	YP_007125935.1	0	Copper amine oxidase domain-containing protein [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q43077\|AMO_PEA	8.00E-62	Primary amine oxidase (Precursor)
trEMBL	tr\|A0A059CYN9\|A0A059CYN9_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW83296.1}

Sequence

Transcript Sequence

>Glyur000397s00020470.1
CATCGGATGTGTCGACACACTTACCTGCTCCACTTTCCTTGGATTTCCCCGTGTTCTTTGTTCCGTCTTCTTCGTTAGTTGCTGATTGGCAANAGTGTCCGAAACAGCACAATGGCTGTTCTGTCACGAACATCGAAGAAATGCGGTGGAAAAAGCTAAAAGAAGAATCTATGAACAAAAACAATCACTTCACCAAACCCACTCCACTAGTACTACTTTTCATCGTTTTCAATCTTCACGGAAAATAAAAGCGACCCCCCACTGAGAGACGGAGAAGCATTGCTGTCTGTATGTCACTGTCAGTGGAATACTACAGTGGAGTTTTCTACGGTGAGCTCGCTAACCCTTCGCAATGGCCACAGCTCCGGAAAAAGCGACGCTAGTCAGCAATAACAACCCCAATGCTTCTGTTTGGCCCGACCCAACTGAGGACCCGACCCGGAACACACCCTCCCTCCCTCATCCTCCTCCCAAAACCACTCCTACTACCAAAGCAATAGGTATCCCAGTCATGATGAGAGCTCAAACATGTCACCCTTTAGATCCACTTTCTGCTGCTGAAATATCAGTAGCTGTGGCAACNGAGAGGGATAGCATGCGCTTTGTTGAAGTAGTGTTGGTAGAGCCAGATAAGCAAGTTGTTGCATTAGCAGATGCATATTTCTTCCCTCCTTTCCAGCCATCATTGCTCCCCAGGACCAAAGGAGGAGGACCTATGATCCCTACTAAACTACCCACAAGGAAAGCACGACTAGTTGTTTACAATAAAAGGTCAAATGAGATAAGCATATGGGTTGTTGAACTTAGAGAAGTTCATGCAGCAACTCGAGGTGGCCCCCATAGGGGCAAAGTGATTTCTTCTCAAGTTGTTCCAAATGTTCAGCCACCAATGGATGCTGTGGAGTATGCTGAATGTGAAGCTGTTGTGAAGGACTTCCCTCCATTTCAAGAAGCAATGAAGAAAAGAGGGATTGCGGACATGGATCTTGTAATGGTGGATGCCTGGTGTGTTGGATATCATAGTGAAGCTGATGCTCCTAGCCGCAGGCTTGCTAAACCACTAATCTTCTGTAGAACTGAGAGTGACTGCCCTATGGAAAATGGCTATGCCCGTCCAGTTGAAGGAATCTATATCCTTGTTGACATGCAAAATATGGTTGTTCTCGAGTTTGAAGACCGTAAACTGATCCCCCTTCCACCTACTGATCCACTGAGAAATTATACTTCTGGTGAAACCCGTGGAGGAGCTGATAGAAGTGATGTGAAACCCTTACAGATTATTCAGCCTGAAGGTCCAAGTTTTAGAGTCAATGGTCACTTCATTCAATGGCAAAAGTGGAACTTTCGTATTGGTTTCACTCCTAGGGAAGGTTTGGTTATTTATTCAGTAGCCTATATTGATGGAAGTCGAGGGCGAAGGCCAGTGGCCCATAGATTGAGTTTTGTTGAGATGGTGGTCCCTTACGGAGATCCAAATGATCCTCACTATAGGAAGAATGCTTTTGATGCTGGAGAAGATGGCCTGGGCAAAAATGCTCATTCTCTCAAGAAGGGTTGTGATTGTTTAGGCTATATCAAGTACTTTGATGCTCACTTCACAAATTTTAATGGAGGTGTTGAAACAATAGAGAATTGTGTTTGCTTGCATGAAGAGGATCATGGTATTTTGTGGAAGCATCAAGATTGGAGAACAGGTTTGGCTGAAGTTCGAAGGTCTAGAAGGTTGACAGATGGGAAAATAGAAGCTGAGGTCAAGCTCACAGGAATTCTCAGCTTAGGAGCAATGCAACCAGGTGAAACTCGAAAATATGGCACGACTATTGCACCTGGATTATATGCACCTGTCCACCAACACTTTTTTGTTGCTCGTATGGACATGGCTGTTGATTGCAAGCCCGGTGAAGCTTTTAATCAGGTTGTTGAGATGGATGTCAAAGTTGAGGAGCCAGGCAAGAGTAATGTTCACAACAATGCATTTTATGCTGAGGAAAAACTGCTCAAGTCAGAGTTGGAAGCAAGGCGTGATTGTAACCCTTTATCTGCTCGGCACTGGATTGTCAGAAACACACGGACGGTAAACCGAACTGGGCAGCTAACAGGTTACAAGCTAGTACCCGGTTCAAATTGTTTACCCCTAGCTGGTTCAGAGGCCAAGATTCTGCGGAGAGCAGCTTTCTTGAAGCACAATCTTTGGGTAACTCCTTACGTTCACAATGAAATGCATCCCGGAGGAGAGTTCCCTAATCAAAATCCACGCGTTGGAGAGGGTTTGGCTACTTGGGTTAAGCAAAATAGATCACTGGAGGAAGCTGATATAGTTCTTTGGTATGTATTTGGAGTGACGCACATTCCCCGATTGGAAGATTGGCCTGTTATGCCAGTGGAACGCATTGGTTTTATGCTTATGCCACATGGGTTTTTCAATTGCTCCCCAGCTATTGATGTTCCCCCAAGTGCAATTCGGACAAAGAAACATAAAAACATGCGTGGCAGAAAAACAAAACCCTCCATAGTCCATTCCGTTTCCGAACTCGGCTTCGTAGACTCGGTTGACTCACCCCTACACAACACAGCAACACACCATCCAATCCAATCCAATTCATCCTCGAACTCAACGAAAGCAATCCTCGTTTGTCCTAGTTTCTCCGACTCGGCGGAGATGGCGGCGTCGTCGTCGGAAGAAAAGCGAGTGGAGGAAGAGTTATCGTACCCGATTCTGGTGGCGGAGCGAGTTCGCTCGGCGGTGGAGGAGTCCGTGTCATTTAAACTCGAGTGCTCCGAGGTGTGGAAGCAAGTGGATCGCCTCCTCCAAATGCTCCGAACGGTGGTCCGTCTCGCCGCCACACCGCCGCCGCTCTACGAGCGTCCCGTCCGTCGAGTCGCCGCCGAGACGGCGAAGAATCTGGAACGCGCAGTAACCCTCGTTCGTAAGTGCAGCAAACGCCGCAACATCCTCCACCGCGTCGTGAGCATAGTCAGCGCCGCCGATTTCCGCAAACTCTTCGGCTACCTCGACGCCTCCGTCGGCGACATGCGGTGGCTCCTCAGCATCCTCGACACCGACGGCGGAGCCGGCGGTGGCGGAGGAATCGTTCTCTCACTCCCTCCCATTGCCAGCAACGACCCCATCCTCGCTTGGGTATGGTCTTTTATCGCTTCCATTCAAATGGGTCAATTGAATGATAGAATTGAAGCCGCGAATGAACTTGCTTCATTAGCACAAGATAACGATAGGAATAAGAAGATCATAGTTGAGGAAGGTGGTGTGCCTCCCTTGTTGAAGCTCTTCAAGGAAGGCACTTCCCCCGCCGCGCAAATTGCGGCGGCTAGTGCTCTCTGTCATTTGGCCAATGATTTAGAGAGGGTTAGGGTGATTGTGAGTGAGCTTGGTGTTCCTGCTGTTGTGCAGGTTCTTGGTGATTCCCCAATCAGGGTTCAAACCCTTGCTGCCAATTTGGTAGCAAGGATGGCTCAGCATGACCCCATTGCTCAGGAGGATTTCGCGAGGGAGAACGCGATTAGGCCGCTTGTTACGCTTCTGTCGTTTGATACTGCTGTGGATGAGCAGTTTCCCAGGCAGAGTATTCATTCCATTGTTCAGATTAATAAGGAATTGGGTAAGAAGTCATCGGATAGGACGCCTGGTGGTAGTCGGCAGTTTTCAAACACGTACTCTAATTCGTATTTCTACGTGGAGGGGAGTAGCCGTGGGGGGAACTATAGGAAGGAGAGGGAGAATGAGGACCCTGCGGTGAAGCTTCAGCTGAAGGTTAGCTGTGCCGAGGCTTTGTGGATGCTCGCGGCGGGGAGTGTGTCAAATAGTAGGAAGATAACTGAGACCAAAGGGATGCTTTGTTTGGCTAAGATTATTGAGAAGGAGCAAGGGGAGCTGCAGTTGAATTGCTTGATGACTATGATGGAGATAACGGCTGCGGCCGAATCCAATGCTGACCTTCGGCGTGCCGCGTTTAAGACCAACTCCCCTGCTGCTAAGGCTGTTGTGGATCAGCTCTTGAGGATAATTAAAGAGGTGGACAGCCCGTCACTGCAAATCCCGGCGATAAAGTCCATTGGTTCGTTGGCTAGGACATTTCCTGCTAGGGAGACTCGGGTAATTGAACCTCTTGTAGCACAGCTGGGTAATAGGAACACAGATATAGCAAATGAAGCGGCCATTGCTCTTACCAAGTTTGCTTCTCCAGATAATTTCCTATATGTTGAGCATTCTAAGACAATAATTGAGTTCAATGGAGTCCCAGCACTGATGAGACTGCTAAGGAGTAACGAAGTCAACCAGTTGCATTATGGGTTAACTCTCCTTTGCTACCTTGCACTACATGCTGGCAACAGCGAGTCCTTGGAACAAGCGAGGGTGTTGACGGCTCTAGAGGGAGCAGATAGAACAGTTCTTCCTCAGCATATAAGAGANTTGGTGTCCAGGGCAATAGTCCACCTCAATTTGTATCATGCAGGAAGGAATTCTCAGAGG

Protein Sequence

>Glyur000397s00020470.1
MATAPEKATLVSNNNPNASVWPDPTEDPTRNTPSLPHPPPKTTPTTKAIGIPVMMRAQTCHPLDPLSAAEISVAVATERDSMRFVEVVLVEPDKQVVALADAYFFPPFQPSLLPRTKGGGPMIPTKLPTRKARLVVYNKRSNEISIWVVELREVHAATRGGPHRGKVISSQVVPNVQPPMDAVEYAECEAVVKDFPPFQEAMKKRGIADMDLVMVDAWCVGYHSEADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIYILVDMQNMVVLEFEDRKLIPLPPTDPLRNYTSGETRGGADRSDVKPLQIIQPEGPSFRVNGHFIQWQKWNFRIGFTPREGLVIYSVAYIDGSRGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFNGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTDGKIEAEVKLTGILSLGAMQPGETRKYGTTIAPGLYAPVHQHFFVARMDMAVDCKPGEAFNQVVEMDVKVEEPGKSNVHNNAFYAEEKLLKSELEARRDCNPLSARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKILRRAAFLKHNLWVTPYVHNEMHPGGEFPNQNPRVGEGLATWVKQNRSLEEADIVLWYVFGVTHIPRLEDWPVMPVERIGFMLMPHGFFNCSPAIDVPPSAIRTKKHKNMRGRKTKPSIVHSVSELGFVDSVDSPLHNTATHHPIQSNSSSNSTKAILVCPSFSDSAEMAASSSEEKRVEEELSYPILVAERVRSAVEESVSFKLECSEVWKQVDRLLQMLRTVVRLAATPPPLYERPVRRVAAETAKNLERAVTLVRKCSKRRNILHRVVSIVSAADFRKLFGYLDASVGDMRWLLSILDTDGGAGGGGGIVLSLPPIASNDPILAWVWSFIASIQMGQLNDRIEAANELASLAQDNDRNKKIIVEEGGVPPLLKLFKEGTSPAAQIAAASALCHLANDLERVRVIVSELGVPAVVQVLGDSPIRVQTLAANLVARMAQHDPIAQEDFARENAIRPLVTLLSFDTAVDEQFPRQSIHSIVQINKELGKKSSDRTPGGSRQFSNTYSNSYFYVEGSSRGGNYRKERENEDPAVKLQLKVSCAEALWMLAAGSVSNSRKITETKGMLCLAKIIEKEQGELQLNCLMTMMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRIIKEVDSPSLQIPAIKSIGSLARTFPARETRVIEPLVAQLGNRNTDIANEAAIALTKFASPDNFLYVEHSKTIIEFNGVPALMRLLRSNEVNQLHYGLTLLCYLALHAGNSESLEQARVLTALEGADRTVLPQHIRXLVSRAIVHLNLYHAGRNSQR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00397	73556	88619	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00276	AOC3, AOC2, tynA	EC:1.4.3.21	Glycine, serine and threonine metabolism	map00260
			Glycine, serine and threonine metabolism	map00260
			Tyrosine metabolism	map00350
			Tyrosine metabolism	map00350
			Phenylalanine metabolism	map00360
			Phenylalanine metabolism	map00360
			beta-Alanine metabolism	map00410
			beta-Alanine metabolism	map00410
			Isoquinoline alkaloid biosynthesis	map00950
			Isoquinoline alkaloid biosynthesis	map00950
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

biological_process

GO:0009308 amine metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005488 binding

GO:0005507 copper ion binding

GO:0005515 protein binding

GO:0008131 primary amine oxidase activity

GO:0048038 quinone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000397s00020470.1	PF02728.11	Cu_amine_oxidN3	178	282	9.10E-33
Glyur000397s00020470.1	PF01179.15	Cu_amine_oxid	306	458	1.20E-61
Glyur000397s00020470.1	PF01179.15	Cu_amine_oxid	459	701	2.60E-78
Glyur000397s00020470.1	PF00514.18	Arm	959	999	7.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.654
SRR1783600	control	19.694
SRR1783602	moderate drought stress	8.728
SRR1811619	moderate drought stress	8.733

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.042
DRR006520	Root Summer glycyrrhizin high producing strain	9.953
DRR006521	Root Winter glycyrrhizin high producing strain	6.716
DRR006522	Root Winter glycyrrhizin high producing strain	6.471
DRR006523	Root Summer glycyrrhizin low producing strain	5.579
DRR006524	Root Summer glycyrrhizin low producing strain	5.778
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.874
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.898

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.086
SRR2868004	Drought Stress (root)	36.296
SRR2967015	Control (root)	28.211

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.332
SRR9715740	Leaf	9.386
SRR9715741	Leaf	9.019
SRR9715739	Root	9.557
SRR9715742	Root	15.390
SRR9715743	Root	14.008

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.416
SRR8749028	MeJA induced 9h	6.960
SRR8749029	MeJA induced 9h	5.428
SRR8749030	Uninduced	4.406
SRR8749031	Uninduced	2.818
SRR8749032	Uninduced	3.788

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.763
SRR8400027	Control - Root	26.235