Gene detail

Gene detail information of Glyur000397s00020467

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26590.1	0	MATE efflux family protein
NR	XP_003613128.1	0	Protein TRANSPARENT TESTA [Medicago truncatula]
COG	YP_003264696.1	6.00E-34	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	5.00E-132	Protein TRANSPARENT TESTA 12
trEMBL	tr\|G7JYX6\|G7JYX6_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000397s00020467.1
TCTCTCTGGGTATTGAATGGAAATTGAGTGTCCATTAATCATTTTTCTTCTTTTTATCCCTCTTTTTGTCATATGACTCCTCTATTACATTTATTACTAATCTCTCTTCTATTTGTATATATTGGTGGCCGTTGGATAACATGCAGTTGTCCAAAAATGATTTTCCAGTTGTCACAATTCCGTCTCTCACCCTCTCTCTATTTGTGTGTGTATACTGTATAGTAAGTATGAAGAATGTGAACTGGTTTAACTTTTATGCGGAAATGCGGAGAACACTTGATTATACCTTGTGCGCTTGAGGCTATCTCTCATTCTCTTGTATTGAACTTGTGTGCTTGAGGCTATTGTCTGTTCTGTTCTTTTTTTGCATCCCCTCCTCCTAATTTACCCCCAAAATCTCTATCTGTGTAATAATAATTCATATATTTGAGATATGGAGGAAGACTCAGATGGCAACTCGAGACAGCCACTTCTGATTACACCAAAGTCAAGAAATCATGAAATTCACTCCCCACCACCACCACCACCACCACCAACCACTACCACGTCATCAGTTTTCACGGCCACAGCCGCCGACATGGGTCCCATCACCGGCCCCAGAGACTTCACCACACAGTTCACCGCCGAGTCAAAGAAGCTCTGGTACCTCGCGGGCCCCGCTATCTTCTCCTTCGTCTCCAAGTACTCCCTCGGCGCCATCACCCAAATCTTCGCCGGCCACCTCGGCACCATCGACCTCGCTGCCGTCTCCGTCGAAAACTCCCTCATCGCCGGCTTCTCCTTCGGCATCATGCTTGGGATGGGAAGCGCGCTTGAAACGCTGTGTGGGCAAGCGGTGGGAGCAGGGAAGCTAGACATGTTAGGCGTGTACATGCAAAGATCGTGGGTAATACTCCTCTGCATGGCTCTTCCCCTGTGCCTACTCTACATCTTCGCGGCACCAATTCTCAAGTTCATAGGCCAAACAGAGGAAATATCCGATGCGGCGGGGACCTTCGCGGTTTGGATGATCCCGCAGCTGTTTGCGTACGCGATCAACTTCCCCACTGCGAAGTTCCTTCAGGCGCAGAGCAAGGTTATGGTGATTGCCGTCATATCGGGTGTGGCCATGCTGCTGCACCCTCTGTTCAGCTGGTTGCTTATGGTGAAGCTACGGTGGGGACTCGTCGGTGCGGCCGTGGTGCTCAATGGCTCGTGGTGGTTCGTGGTGGTGGCTCAGTTGGTGTACGTGTTTAGTGGGAGGTGTGGGAGCGCGTGGAANGGGTTCTCCTGTGAAGCGTTTCGGAATCTCTGGGGATTCTTTCGCCTCTCCCTCGCCTCTGCTGTCATGCTCTGCTTGGAAACATGGTACTTTATGGCACTGATTTTGTTCGCTGGATATCTCAAGAATGCAGAAGTCTCCGTAGATGCCTTCTCTATCTGCATGAATATATTGGGTTGGACCATCATGGTGTCTTTCGGGATGAACGTGGCCATAAGTGTGCGAGTGTCGAATGAACTCGGGGCAGTTCACCCAAAAACAGCAAGATTTTCGTTGGTGGTTGCGGTGGTCACGTCAATTTTGATCGGGCTGTTACTGGCTCTTGTTTTGATCCTGTCGCGGGAAGAGTACCCTTCCCTTTTTTCGAACGACACACAAGTTAAAGATCTAGTCAAGGATCTCACGCCTCTCTTGTCCCTCTGTGTTGTCATTAATAACGTTCAGCCTGTTCTTTCAGGGGTAGCCATTGGAGCGGGATGGCAGACTGTTGTTGCCTATGTGAACATTGCATGCTACTACCTATTTGGAATTCCCGTGGGTCTTATATTGGGCTACAAGCTTAACCTGGGAGTCAAGGGAATTTGGTGTGGAATGATGTCAGGGACTGTGGTGCAGACATGTGTTCTTCTGCTAATGGTTTACAAAACTAATTGGAACAAAGAGGCCTCCCTTGCTGAAGATAGGATAAGGAATTGGGGTGGCCCCCGAGCGACTGTACACGACATAGGAAATACAGAAGAAACATGAAATTGCAATAGGAGAATGTTTACCATATGAAGAATGATATTTGAATTGAGCACAAGGCATCAGTTCCTTTGAGTGGCGTTTTGTGGGTGAAATTTGATTTGGAATTNAGCCTTAAAATTGAAATGTATATTGTAATTTTAGTTGCTTTGTTTAGTGTGTAGATCATTAATATCGAAATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00397	48691	66812	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000397s00020467.1	PF01554.13	MatE	75	235	5.10E-33
Glyur000397s00020467.1	PF01554.13	MatE	296	457	1.00E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	53.408
SRR1783600	control	48.914
SRR1783602	moderate drought stress	40.148
SRR1811619	moderate drought stress	39.068

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	72.842
DRR006520	Root Summer glycyrrhizin high producing strain	70.856
DRR006521	Root Winter glycyrrhizin high producing strain	72.360
DRR006522	Root Winter glycyrrhizin high producing strain	69.518
DRR006523	Root Summer glycyrrhizin low producing strain	85.642
DRR006524	Root Summer glycyrrhizin low producing strain	86.029
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.618
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.808

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.073
SRR2868004	Drought Stress (root)	18.773
SRR2967015	Control (root)	28.929

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.269
SRR9715740	Leaf	7.080
SRR9715741	Leaf	10.054
SRR9715739	Root	61.097
SRR9715742	Root	49.678
SRR9715743	Root	53.694

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.579
SRR8749028	MeJA induced 9h	20.414
SRR8749029	MeJA induced 9h	18.913
SRR8749030	Uninduced	24.185
SRR8749031	Uninduced	25.783
SRR8749032	Uninduced	13.782

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.981
SRR8400027	Control - Root	56.700