Gene detail

Gene detail information of Glyur000397s00020466

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26590.1	0	MATE efflux family protein
NR	XP_003551225.1	0	PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]
COG	YP_003264696.1	6.00E-24	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	3.00E-118	Protein TRANSPARENT TESTA 12
trEMBL	tr\|K7MS37\|K7MS37_SOYBN	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000397s00020466.1
ATGCTGACGGAGAACAACAGTGATGAGAGGCAGCCATTGCTCGCACCGGCAAACGAACACGGCCGGACGACCCTGCGACCAGCAGAGACAGCAGTTTTCACCGCAGATTCCGATGACATTCCTCCGATCACCGGCGTGGGTGACTTCTTCAGAGAATACTGGGTCGAGTCCAAGAAGCTCTGGTATCTTGCCGGCCCCGCCATCTTCACCAGCCTCAGCCAGTACTCTCTCGGTGCCATCACTCAGTCCTTTTTAGGCCAAGTCAGCACCATTGACCTCGCTGCCTTTGCCGTTGAGAACTCCGTCATTGCCGGCTTCTGCTTTGGTGTTATGCTTGGGATGGGAAGTGCTTTGGAAACACTATGCGGGCAAGCATTTGGGGCTGGGAAGCTTGACATGATGGGGATATACATGCAGAGGTCATGGGTGATTCTAAATAGCACCGCAGTTTTGCTCAGCCTGTTGTACGTCTTCGCGAGGCAACTTTTGAAGCTAGTAGGGCAGACGACNGCAATAGCAGAGGCAGCGGGTACGCTGGCAGTATGGATGATCCCACAACTCTTTGCATATGCCATGAACTTTCCCATTCAGAAGTTCCTACAGGCACAGAGCAAGATCATGGTGATGGGGTGGATATCNGCATTGGCACTGGTCATGCACACGACACTCAGCTGGTTGCTGGTGCTAAAATTGGGTTGGGGACTGGCGAGTGCGGCACTAGTGTTGAACTTGTCNTGGTGGTTCCTAGTGGTGGCTCAGTTGGTTTATATCTTTAGCGGNGCATGTGGTCCAGCTTGGACCGGGTTCTCCTTCCATGCCTTTCAAAATCTCTGGGGATTTGTGCGTCTCTCTCTCGCCTCTGCTGTCATGCTTTGCCTGGAAGTTTGGTATTTTATGGCTCTTATTTTATTCACTGGATACTTAAAGAATGCGGAAATTTCAGTGGATGCCATGTCTATCTGCATGAATATATTGGGGTGGACAATCATGTTTTCCTTCGGAATGAACGCAGCCGTAAGTGTGCGAGTGTCAAATGAACTGGGGGCAGATCATCCAAGAACAGCAAAATTTTCACCAGTGGTTGCTGTGACTACTTCACTTGTGATTGGTCTCTTACTCTCCATGTTTTTGATGATCTTCCGGGATCAGTATCCTTCCTTGTTTTCAACCAGTGCAGAAGTCAAAGAGTTAGTGATTGAGCTCACACCCATGTTGGCTTTGTGCATTATCATCAACAATGTGCAACCAGTTCTTTCAGGGGTTGCCATTGGAGCAGGATGGCAGACTGTTGTTGCTTATGTGAACATTGCTTGTTATTACCTCTTTGGTGTTCCTTTGGGTCTTATTTTGGGCTTCAAGTTTGACTTGGGTGTCATGGCCTCTCTCGCTGAGGATAGGATAAAGAAGTGGGGCGGGTCTAAGGATTCTGAAGTGAACGAGCTTGAGGAGAGTGATCAAGAAACATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00397	37817	45618	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000397s00020466.1	PF01554.13	MatE	66	226	8.40E-27
Glyur000397s00020466.1	PF01554.13	MatE	287	448	4.40E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.380
SRR1783600	control	0.422
SRR1783602	moderate drought stress	1.874
SRR1811619	moderate drought stress	1.981

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.617
DRR006520	Root Summer glycyrrhizin high producing strain	2.885
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.954
DRR006524	Root Summer glycyrrhizin low producing strain	0.962
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.768
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.742

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.681
SRR2868004	Drought Stress (root)	0.395
SRR2967015	Control (root)	0.494

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.598
SRR9715740	Leaf	3.648
SRR9715741	Leaf	3.354
SRR9715739	Root	1.076
SRR9715742	Root	0.316
SRR9715743	Root	0.393

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.254
SRR8749028	MeJA induced 9h	0.846
SRR8749029	MeJA induced 9h	0.354
SRR8749030	Uninduced	0.198
SRR8749031	Uninduced	0.097
SRR8749032	Uninduced	0.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.013
SRR8400027	Control - Root	0.123