Gene detail information of Glyur000397s00020465


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G70600.11.00E-71Ribosomal protein L18e/L15 superfamily protein
NRKDP31039.12.71E-95hypothetical protein JCGZ_11415 [Jatropha curcas]
COGYP_005841940.16.00E-1750S ribosomal protein L15 [Fervidicoccus fontis Kam940]
Swissprottr|P49637|R27A3_ARATH6.00E-9160S ribosomal protein L27a-3
trEMBLtr|A0A067KGS0|A0A067KGS0_JATCU1.00E-95Uncharacterized protein {ECO:0000313|EMBL:KDP31039.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold003973618636632+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome

GO:0015934  large ribosomal subunit


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000397s00020465.1PF00828.14Ribosomal_L18e201463.20E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control483.504
SRR1783600control501.834
SRR1783602moderate drought stress395.288
SRR1811619moderate drought stress407.545

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain520.599
DRR006520Root Summer glycyrrhizin high producing strain527.450
DRR006521Root Winter glycyrrhizin high producing strain252.172
DRR006522Root Winter glycyrrhizin high producing strain250.335
DRR006523Root Summer glycyrrhizin low producing strain401.754
DRR006524Root Summer glycyrrhizin low producing strain390.692
DRR006525Leaf Summer glycyrrhizin high producing strain150.316
DRR006526Leaf Summer glycyrrhizin high producing strain150.483

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)538.308
SRR2868004Drought Stress (root)307.414
SRR2967015Control (root)274.493

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf224.748
SRR9715740Leaf193.220
SRR9715741Leaf167.749
SRR9715739Root568.942
SRR9715742Root301.043
SRR9715743Root352.235

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h282.012
SRR8749028MeJA induced 9h49.324
SRR8749029MeJA induced 9h159.870
SRR8749030Uninduced26.567
SRR8749031Uninduced15.879
SRR8749032Uninduced49.630

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root274.920
SRR8400027Control - Root261.345

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved