Gene detail

Gene detail information of Glyur000397s00020463

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G70610.1	4.00E-100	transporter associated with antigen processing protein 1
NR	KHN00394.1	0	ABC transporter B family member 26, chloroplastic [Glycine soja]
COG	YP_006256112.1	8.00E-60	multidrug ABC transporter ATPase/permease [Solitalea canadensis DSM 3403]
Swissprot	tr\|Q8RY46\|AB26B_ARATH	2.00E-131	ABC transporter B family member 26, chloroplastic (Precursor)
trEMBL	tr\|I1J537\|I1J537_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G03160.1}

Sequence

Transcript Sequence

>Glyur000397s00020463.1
CGAAAGAAGAGCCAAGCAAAATTCCACTGCGGAACCTTAACCGCAACCTTTTCCCATTCCCTCTTCCTCGTTCAATTCNGTGCGTCTTCTGATACAACACAATACATGGACCACAACGTACTCCTTCCAAGCTCCTAGCTTTATCCTAAACCCATCTTCTTCTTCTTCCAAATTTCTCTGCTACCATGCCTCCTCTACTCGCATTCACACAACCTCGGTTACTTCCTCCTCCGACCCTTCACCATCTCCACCGCCACCGCCACCGCAACAACACAAACACCAAACCTCTGATAATTTCCTCCTCCGACAAGAAGCGCTTCCATTTCGCNGCAACGCGAATCGTTGCTCCCAGGCGCATTCTCTTACCCTCTACTTCAAAGTCGGCGTCCATCAACGGTGTCTCCGTCCAGAACAATCCAGAAGCTTCCGCCGGCGAAGTCAATGCCGCTGAGTTTCTGCAGCGAATTCGAAAATTGGTTGCGTTCCTTCCTTCGATATTTGCCGGTGGAAGCTGGTGGAACTTCTCCGATGACGTGGAGGTTCCGACACTGGCTCAGCCGGTTACCGTGTGGCGTGCCCTCGGCAAAATGTGGGAACTTGTTGCTCGAGACAGATGGGTCATTATCACCGCTTTCTCTACTCTCGTTATCGCAGCAGTTTCGGAGATTTCCATACCACATTTCTTGACAGCATCTATCTTCTCGGCACAGGGTGCGGATATTACAGTTTTCCATCGGAATGTGCGTCTGTTGGGTCTGCTGTGTATAATNTCTGGAATATGCAGTGGGATACGAGGTTGCTGTTTTAGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTTCTTCTTCAGGATATATCCTTTTTTGACTCTGCAACAGTGGGTGATTTGACAAGTAGGCTTGGGGCAGATTGTCAACAAGTTTCAAGGGTTATCGGAAATGACCTTAACTTAATAATGCGCAACATCCTTCAGGGGGCAGGTTCATTAATCTACTTGTTGATTTTGTCTTGGCCACTTGGTTTATGTACATTGACGATATGCTCCATATTAGCAGCAGTTATGTTACGTTATGGAAGGTACAATTGGTGGCTGGGAAAATTAGTTGACATAAGTTTGAGACAAAGTGCTGCATATGGGTTTTGGAATTTTAGCTTCAACACTCTTTATCATTCAACTCAGGTTGGGTGTAACTTTGTTACAGGAATAAAGTTGCAGAGGTTAACGGGGCATATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCAAGGCCAACGGTATCTGTAGTGCGACATGTAAACTTTTCTGTCCATCCTAGTGAGGTGGTTGCCATTGTTGGTCTTAGTGGTAGTGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACCAGTGGTCAGGAACCCAAGCTATTCCGGATGGATATTAGTTCAAACATCAGATATGGATGTACACGAGATATAACACAGGAGGATGTTGAGTGGGCTGCAAAGCAGGCCTATGCTCATGACTTCATCTCAGCACTTCCTAATGGTTATGAAACACTTGTTGATGATGATCTTTTAAGCGGGGGACAAAAACAGCGAATTGCTATTGCGAGGGCCATTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACTAGTGCACTGGATGCTGAAAGTGAACATAATGTAAAGGGTGTTCTTCGATCTGTTAGAAGTGATTCTGCATCAAGGAGAAGTGTCATAGTCATTGCACACAGGCTTTCTACCATACAAGCAGCAGACAGGATTGTGGTGATGGACGGTGGTCAAGTTGTTGAGAATGGAAGTCACAGGGAACTTCTCTTAAAAGATGGTTTATATGCTCGGTTGATTAGAAAACAGGCTGATGCCATGGCATGATCTGGGGTTTCCACAGCAAATATTCTATTTTTCTTCTGGATTCTTTCCTTTCAAAGGAAGTATAGTGGGGCAAGCAACATTTTTTTTTTATTATTGCTGACCCATGTATTCATAGCATTGTACAAAAAAAAAATTGGTGAAGCTTAGCAAAGAAGGAAGCTGCAGCAGTTTCGATTCAAAATGTGTGGCGGCTTCAGAAAGATTTCACACTATCAGGTTCCCAGGCAGATGCAAAAGCATGCAACTTGTGGTACATATGTTTGTTTTAGCAGCAGGAATACTGTAGAAACGCGGTTTGACAGAATGGGAAAAAATTCCTTTGAGAAAAGCATGTATTGGGACTCACATTTTTTCCGTTTTGTGGCAACTTTCATTTAAAACAAGCATGTTTGGTGGATTGGGGGTATTCATAGTCAAAATGCTGNTAAGCTTCATCTGTACTCTGTCATCCTGGTGGTGACCATGTAAACTGTTCATTTTTTAGCTGTAAATTGAATGTTTAGCGCTCGAAGACATTTGATTTACAATGGCAAGGCTTGAATATCACTTGCCCATGTTTGATGGCTCTTCATACTCAAGCTGATGTCTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00397	22136	29021	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000397s00020463.1	PF00664.18	ABC_membrane	147	302	4.50E-13
Glyur000397s00020463.1	PF00005.22	ABC_tran	376	498	2.40E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.305
SRR1783600	control	5.399
SRR1783602	moderate drought stress	4.554
SRR1811619	moderate drought stress	4.615

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.420
DRR006520	Root Summer glycyrrhizin high producing strain	3.587
DRR006521	Root Winter glycyrrhizin high producing strain	7.214
DRR006522	Root Winter glycyrrhizin high producing strain	6.940
DRR006523	Root Summer glycyrrhizin low producing strain	2.452
DRR006524	Root Summer glycyrrhizin low producing strain	2.446
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.532
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.478

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.378
SRR2868004	Drought Stress (root)	9.959
SRR2967015	Control (root)	9.460

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.696
SRR9715740	Leaf	34.100
SRR9715741	Leaf	22.505
SRR9715739	Root	1.510
SRR9715742	Root	3.421
SRR9715743	Root	2.873

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.182
SRR8749028	MeJA induced 9h	8.277
SRR8749029	MeJA induced 9h	5.409
SRR8749030	Uninduced	5.383
SRR8749031	Uninduced	5.378
SRR8749032	Uninduced	3.356

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.720
SRR8400027	Control - Root	10.284