Gene detail

Gene detail information of Glyur000396s00032778

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27290.1	2.00E-118	S-locus lectin protein kinase family protein
NR	XP_006593151.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max]
Swissprot	tr\|O81832\|Y4729_ARATH	9.00E-146	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|K7LUS0\|K7LUS0_SOYBN	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000396s00032778.1
ATGGATATTCTTTCCTTATTCATCATTGTTGCATCATATCTACTTATTATTCCTTCCATCAAAGTTTCCATAGCAGTTGATACTATTCTTTTGTCCCAGTCAATCAGTGATGGCACAACCTTGGTTTCCCAAGGTGAAAAATTCGAACTTGGTTTCTTTAGTCCCCAGAATTCCAGCAAACGTTACCTTGGGATTTGGTACAAGAACATCCCAATTCAAACAATTGTTTGGGTTGCAAATGGGGTCAAACCCATCAATGATTCCTCTGGCACCTTAACACTGAACAACACTGGCAACCTTGTCCTCAAACAGCATGACAACAAGGTTTTGTGGTACACAACAATACCTCAGAAACAAGCAAAGAATCCAGTGGCACAGCTTCTAGATTCAGGGAATCTTGTGGTGAGAGATGAGAGTAGTAGTGAAGAAGAAGAAGACTATTTGTGGCAGAGCTTTGACTACCAATCTGATACAGCACTTCCAGGGATGAAGTTGGGGTGGGACCTTAGAACTGGTTATGAATGGAGAGTGACATCATGGAAGAGTCCTAATGATCCATCCCCAGGTGAGTTCTACTGGGCAACATTTCTTTATAACTATCCTGAGATATATCTCATGAAGGGAACTGACAAGTTTATAAGACTTGGACCATGGAATGGACTTCATTTTAGTGCTGTACCAGATCTAAAGCCTAACCCAATTTTTTATTACAAGTATGTGTCCAACAAGGATGAGATGTTCTACACTTATAGTCTCCAGAATGATTCTGTGATTTCAAGATTGGTAATCAATCAAACCACTTCCATGTTTGTTCGATACGTGTGGATGGAAGAGGAACAGGTTTGGAAGAACTATAAGTCACTCCCAAAGGACAGTTGTGACTTTTATGGCACCTGTGGAGCCTATGGGACTTGCATAATCACAGGCTTCCAAATATGCCAGTGTTTATCAGGGTTTAGTCCAAAGTCACCACAAGCATGGAACTCATCTGATTGGTCTCAAGGGTGTGTTAGAAATAAACCTCTGAACTGTACTAATAAACTCAAGGATGGGTTTGTGAAAGTGGAAGATGCAAAAGTGCCAGATACTACACATACTTGGGTAGATAAGACAATTGGTCTAGATGAATGCAGGGTCAAGTGCTTGAGTAATTGTTCTTGTATGGCTTATACTAATTATGACATAACAGGAGAAGGTAGTGGCTGTGTCATGTGGTTTGGTGATCTAATTGATATTAGGCAGTTTCAGGATGAAGGGCAGGATCTNTATATTCGAATGGATGCTTCAGAATTGGATACAGGGGAAGGTGATGGGCTCAAGAAGGAGCTACTTAGAATAGCTTCTATCGTCGTCATAATTTTAGTGGTGCTTTTTCTTGGATATCGTTACTACATTGTCCAGCGCCGTGTAACTGCCGAGAATTCAGAAATTTTTGAACTAGAAGATGGCAGCGGTAGTGAGGATGATCTCGATCTCCCATTGCTTGAGCATTCAGCAATAGTCACTGCCACCGATAACTTCTCGATAAAGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGCATGGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00396	88403	92602	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

molecular_function

GO:0005515 protein binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000396s00032778.1	PF01453.19	B_lectin	73	187	2.90E-32
Glyur000396s00032778.1	PF00954.15	S_locus_glycop	214	323	2.20E-30
Glyur000396s00032778.1	PF08276.6	PAN_2	347	412	9.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.818
SRR1783600	control	0.817
SRR1783602	moderate drought stress	1.281
SRR1811619	moderate drought stress	1.254

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.046
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.235
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.196

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.104
SRR2868004	Drought Stress (root)	19.705
SRR2967015	Control (root)	18.661

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.049
SRR9715740	Leaf	0.778
SRR9715741	Leaf	2.797
SRR9715739	Root	0.255
SRR9715742	Root	1.582
SRR9715743	Root	1.064

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.285
SRR8749028	MeJA induced 9h	1.430
SRR8749029	MeJA induced 9h	0.499
SRR8749030	Uninduced	1.189
SRR8749031	Uninduced	1.940
SRR8749032	Uninduced	0.049

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.848
SRR8400027	Control - Root	7.236