Gene detail information of Glyur000394s00031622 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13570.1 | 3.00E-19 | F-box/RNI-like superfamily protein |
| NR | AFK36982.1 | 2.42E-63 | unknown [Medicago truncatula] |
| Swissprot | tr|Q9FZ70|FDL1_ARATH | 2.00E-20 | F-box/FBD/LRR-repeat protein At1g13570 |
| trEMBL | tr|I3S9P0|I3S9P0_MEDTR | 9.00E-64 | Uncharacterized protein {ECO:0000313|EMBL:AFK36982.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00394 | 89602 | 99495 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000394s00031622.1 | PF08387.5 | FBD | 133 | 177 | 3.10E-06 |
| Glyur000394s00031622.2 | PF07723.8 | LRR_2 | 138 | 158 | 0.037 |
| Glyur000394s00031622.2 | PF08387.5 | FBD | 277 | 321 | 4.30E-06 |
| Glyur000394s00031622.2 | PF07723.8 | LRR_2 | 454 | 476 | 0.0073 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.804 |
| SRR1783600 | control | 4.800 |
| SRR1783602 | moderate drought stress | 5.881 |
| SRR1811619 | moderate drought stress | 6.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.131 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.863 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.279 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.553 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.111 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.932 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.073 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.286 |
| SRR2868004 | Drought Stress (root) | 11.138 |
| SRR2967015 | Control (root) | 10.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.943 |
| SRR9715740 | Leaf | 7.990 |
| SRR9715741 | Leaf | 6.251 |
| SRR9715739 | Root | 2.680 |
| SRR9715742 | Root | 4.943 |
| SRR9715743 | Root | 4.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.532 |
| SRR8749028 | MeJA induced 9h | 11.508 |
| SRR8749029 | MeJA induced 9h | 14.114 |
| SRR8749030 | Uninduced | 29.152 |
| SRR8749031 | Uninduced | 21.576 |
| SRR8749032 | Uninduced | 11.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.534 |
| SRR8400027 | Control - Root | 6.928 |