Gene detail

Gene detail information of Glyur000393s00028756

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71810.1	0	Protein kinase superfamily protein
NR	XP_004489901.1	0	PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_007056769.1	3.00E-147	putative unusual protein kinase [Rivularia sp. PCC 7116]
Swissprot	tr\|Q94BU1\|Y1181_ARATH	0	Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic (Precursor)
trEMBL	tr\|A0A072UA79\|A0A072UA79_MEDTR	0	Unusual kinase, putative {ECO:0000313\|EMBL:KEH25983.1}

Sequence

Transcript Sequence

>Glyur000393s00028756.1
ATGCAAGCTCGCCATGATGAGTTAATTAACCAATTTGCTCAAGTGTTTGAAAGTAATAAGTGGTTTCAAGAAAGCATAATTGGAAGGTTGGAAAGGAGGTATGGAAAAGAGAGAAGATATAGAGATTATGATGAGGAGGAAAGGAGTATACAGAAGAAAGCCAGGGAAAAAGAAATAAGGCATGTGTATTATGATGAGGATCATAGGAGGTATGAAAAGAGGTGTAAAGAAGAAGAAAGAAAACATAGAGCCTATGAAATGAAAGATAAGAAGGATATTAAGTGCTACATATGTACGGGAAGAGGACACACATCTTCTCAATGCTCGAATTTGCTAGGGATAGTTTCCAAGGAAGCTTGTAAGGATCAAGTGAGAGCTGCACAGCTAAGAAAGATATTGGTGGAACTTGGGCCGGCGTATATCAAAATTGCCCAGGCTATATCATCTCGTGCTGTGAGTTCTGCTTTATCTGTCACTGTTAAATCTTATCTTCATATTCTTATTGATTTGATACCACCATCATATCTAGATGAGCTCTCGCTGCTGCAAGATCGAATAAGTCCATTTTCCACTGAAGTTGCTTTCAACATGATTGAACAAGAACTTGGTTTATCTTTGGTTGAACTTTTCTCAGAGATTTCACCTGAGCCTGTAGCTGCTGCATCCCTTGGGCAGGTTTATCAAGCTAGGCTTCGTAAAACAGGACAGGTTGTTGCTGTTAAAGTGCAAAGACCAGGAGTTCAAGCAGCAATTTCCCTTGACATATTAATCTTGCGTTTTATGGTTGGGTTGATTAAGAGAGCTGGCAAACTGAATACTGATCTTCAGGCAGTTGTCGATGAGTGGGCATCAAGTCTTTTCCGGGAGATGGACTACAATAATGAAGCAAGCAATGGTATCAAGTTCAGGAATTTATATGGTTCTATAAAAGATGTGGTGGTTCCTCTAATGTACATGGACTACACAACTCGGAAGGTCCTTGTTATGGAATGGATTGAGGGGAAAAAGTTGTCAGAAGTGAAGGATCTCTACCTGATTGAGGTAGGAGTTTACTGCTCATTCAATCAACTTCTTGAGTGTGGGTTCTATCATGCAGATCCACACCCTGGAAATCTTCTTCGGACATATGATGGCAAATTAGCTTATTTAGGTGAATTCAAACAAGAATTGCGAGAAGGATTCATTGAAGCTTGTCTACATCTTGTGAATCGCGATTTTGATGCATTGGCTAAGGATTTTGTCACTCTTGGGCTTCTTCCACCAACTGCAGACAAAGAAGCAGTTACAAAGGCCTTGACAGGTGTTTTTCAAAATGCTGTTTCCAAAGGAGTTCGTAATATCAGCTTTGGAGACCTTCTAGGAAACTTAGGAGTGACCATGTATAAATTCAAATTTAGGATCCCTTCATACTTCTCACTTGTCATCCGAAGCCTTGCTGTACTAGAAGGAATTGCAATCGGCTTTAACCCTGAGTACAAAGTCTTGGGTAGTACTTACCCTTGGATTGCTCGAAAAGTTCTTACTGATAGCTCCCCTCAGCTTAAATCTTCTTTGGAGAATCTTCTTTATAAGGATGGTGTTTTCAGAATAGACCGTCTAGAGTCTTTGCTTACAGAGTCTCTCCGTGCCAAAACAAAAAAGGCGTTGGTGAAGAAACCATCTGAAGGNGCAGATTCGAGAATGGTTATGAAGGAAATCCTTTCTTTTACGCTAACAGAAAAGGGTGAATTTGTCAGGAAAATAATTGTTCAAGAATTTGCTAAAGGTTTAGATGCACTTGGGCTAGCAACCTTGGAAACAGCTGCTGCAAGAGTTCCTTTCAGTGCTTTCTTCTTTTCCTCTTTAATGTCTGAAGAAGATAGAGTCAACCTAAGAACCTTCCAACGCCTTATGCTATTACTTTCAGGGACCAGAAGAAAAGAAGACTCCAATACACTCCCACCAGAGTCCCGGCAGCAATTACTTCAATTGCCAGCTAACTTGGTTAGACAATTACTATCTCGCGCTGCTGCAAGAACTATTAGGAGGCTCCCACCAGAGTCCCGGCAGCAATTACTTCAATTGCCAGCTAACTTGGTTAGACAATTACTATCTCGCGCTGCTGCAAGAACTATTAGGAGGGTGTTTCTGTGACATGGATGAAGCTGAAGTCTGTTTGTGCTTCTCACCAATGTGACAAGGAGAACACAGAGAGGACATTGTGACAAAGGCCTTTAAATTTGCGTAAATATATGCTACAGTGATTCATTCAGCAAGAAATTATTTGCTTTCAATCCATATTTTCTTTGATTTTATTTCTAACTATGTATGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00393	15913	65209	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0008270 zinc ion binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000393s00028756.1	PF03109.11	ABC1	200	318	1.40E-32
Glyur000393s00028756.2	PF03109.11	ABC1	200	318	1.30E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.916
SRR1783600	control	2.762
SRR1783602	moderate drought stress	2.521
SRR1811619	moderate drought stress	2.513

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.239
DRR006520	Root Summer glycyrrhizin high producing strain	4.697
DRR006521	Root Winter glycyrrhizin high producing strain	4.122
DRR006522	Root Winter glycyrrhizin high producing strain	4.032
DRR006523	Root Summer glycyrrhizin low producing strain	2.270
DRR006524	Root Summer glycyrrhizin low producing strain	2.365
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.189
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.145

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.253
SRR2868004	Drought Stress (root)	2.630
SRR2967015	Control (root)	2.621

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.287
SRR9715740	Leaf	5.836
SRR9715741	Leaf	4.963
SRR9715739	Root	1.008
SRR9715742	Root	0.913
SRR9715743	Root	0.827

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.117
SRR8749028	MeJA induced 9h	1.729
SRR8749029	MeJA induced 9h	1.279
SRR8749030	Uninduced	1.651
SRR8749031	Uninduced	1.370
SRR8749032	Uninduced	0.926

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.899
SRR8400027	Control - Root	2.409