Gene detail information of Glyur000392s00023205 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_008782594.1 | 6.09E-12 | PREDICTED: E3 ubiquitin-protein ligase listerin isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9FGI1|LTN1_ARATH | 1.00E-08 | E3 ubiquitin-protein ligase listerin |
| trEMBL | tr|A0A072UEK1|A0A072UEK1_MEDTR | 5.00E-10 | E3 ubiquitin-protein ligase listerin-like protein {ECO:0000313|EMBL:KEH28199.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00392 | 157387 | 157859 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.408 |
| SRR1783600 | control | 5.753 |
| SRR1783602 | moderate drought stress | 10.947 |
| SRR1811619 | moderate drought stress | 9.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.038 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.167 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.393 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.986 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.157 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.354 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.205 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.658 |
| SRR2868004 | Drought Stress (root) | 7.391 |
| SRR2967015 | Control (root) | 5.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.418 |
| SRR9715740 | Leaf | 0.188 |
| SRR9715741 | Leaf | 1.359 |
| SRR9715739 | Root | 1.549 |
| SRR9715742 | Root | 7.147 |
| SRR9715743 | Root | 3.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.315 |
| SRR8749028 | MeJA induced 9h | 3.848 |
| SRR8749029 | MeJA induced 9h | 0.598 |
| SRR8749030 | Uninduced | 0.193 |
| SRR8749031 | Uninduced | 0.748 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.716 |
| SRR8400027 | Control - Root | 6.292 |