Gene detail

Gene detail information of Glyur000392s00023199.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05160.1	2.00E-147	AMP-dependent synthetase and ligase family protein
NR	XP_006591122.1	0	PREDICTED: 4-coumarate--CoA ligase-like 7-like isoform X2 [Glycine max]
COG	YP_003291469.1	3.00E-81	AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252]
Swissprot	tr\|Q9M0X9\|4CLL7_ARATH	0	4-coumarate--CoA ligase-like 7
trEMBL	tr\|I1LL16\|I1LL16_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G20020.2}

Sequence

Transcript Sequence

>Glyur000392s00023199.1
ATGTCTCAACCCAACACTCCAGTGTCAACATTCACACCACTCGTTCACCATTTCAAATCAAAAGCCAAAACCAAATCTGGGTACGATCACGAATATGGAATATATAGGTCCCTAAGGCCTTCCCTAGTTCTCCCCAACGACCCCAACCTTTCCCTCGTCTCATTCCTCTTCGCTAGCGTCTCTTCCTTCCCCACCAAACCCGCCCTCGTCGACTCCGACTCTTCACAAACCCTCTCCTTTGCTCAACTCAAATCCCAAGTCGCCAAGCTNGCCCACGGTTTCCTCAACCTCGGCATCAACAAAAATGAGGTCATCCTCCTCATTGCACCTAACANCATCCACTTCCCCGTATGCTTCCTNGCTGCCACCTCCATTGGTGCCATCTTCTCCACCGCCAACCCCGATTATACCAACTCGTCAAGTTCAAAGTCCATGAGTTTCTACACGTTGATGGAGGCGGTGGGGCCAGTGGCGGAGTTGCCAAAACATGACGTGAAACAAGTCGATACAGCAGCGCTTATGTACTCATCAGGGACCACGGGAATAAGCAAGGGTGTGGTTCTCACACACAGGAACTTCATCGNGGCNTCACTTATGCTTGGCATGGACGACGATTTGGCGGGGGAGTTAAACAACGTGTTCCTTTGTGTTTTGCCGATGTTTCACCTCTTTGGGCTTGCCATCGTCACATATGCGCAGCTTCGGCGAGGGAGCACAGTGGTGTCAATGAGGAGGTTTGAGTTAGAGGCGTTGTTGAAGGCCATTGAGAAGCACAGGGTGACGAATTTGTGGGTGGTACCTCCCATCGTGCTTTATCTGGGAAAACAAGACATGGTTAANAAGTATGATCTATCATCTTTGAAGCATATTGGGTCTGGTGCTGCTCCTCTTGGGAAGGAGTTGATGGAGGAGTGTGGCTATGGTATGACAGAAACTTGTGGCATTGTTTCTATGGAGAATCCAAGAGAGGGGATTCGTCATACTGGTGCAGCTGGAATGCTGGTTTTAGGAGTTGAAGCTCAAATAGTGAGTGTGGAAACACAGAGGCCGCTCCCTCCAAGACAGTTGGGGGAATTATGGGTACGGGGTCCTAACATGATGCAAGGCTATCATAACAATCCACATGCCACAAGATTGACTTTAGATGAAGAAGAGTGGGTGCATACAGGAGATCTTGGATATTTCGATGAGGATGGGCAACTTTATGTTGTTGACCGTATCAAAGAACTAATCAAGTACAGAGGTTTTCAGATATCCAGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00392	104043	109271	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01904	4CL	EC:6.2.1.12	Phenylalanine metabolism	map00360
			Ubiquinone and other terpenoid-quinone biosynthesis	map00130
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000392s00023199.1	PF00501.23	AMP-binding	59	139	8.60E-15
Glyur000392s00023199.1	PF00501.23	AMP-binding	166	414	7.90E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.021
SRR1811619	moderate drought stress	0.077

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.254
DRR006520	Root Summer glycyrrhizin high producing strain	0.110
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.005
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.411
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.362

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.007
SRR9715740	Leaf	1.373
SRR9715741	Leaf	1.342
SRR9715739	Root	0.000
SRR9715742	Root	0.050
SRR9715743	Root	0.023

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.033
SRR8400027	Control - Root	0.146