Gene detail information of Glyur000392s00023198 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01720.1 | 3.00E-76 | RNI-like superfamily protein |
| NR | KHN19134.1 | 3.67E-164 | F-box/LRR-repeat protein 3 [Glycine soja] |
| COG | YP_008925.1 | 5.00E-23 | hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q8RWU5|FBL3_ARATH | 5.00E-95 | F-box/LRR-repeat protein 3 |
| trEMBL | tr|K7KAA2|K7KAA2_SOYBN | 5.00E-169 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G39880.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00392 | 93413 | 98934 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000392s00023198.1 | PF13516.1 | LRR_6 | 249 | 271 | 0.26 |
| Glyur000392s00023198.1 | PF13516.1 | LRR_6 | 355 | 378 | 0.41 |
| Glyur000392s00023198.1 | PF13516.1 | LRR_6 | 381 | 404 | 0.072 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.579 |
| SRR1783600 | control | 4.888 |
| SRR1783602 | moderate drought stress | 3.859 |
| SRR1811619 | moderate drought stress | 3.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.553 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.420 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.516 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.509 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.602 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.687 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.074 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.531 |
| SRR2868004 | Drought Stress (root) | 12.747 |
| SRR2967015 | Control (root) | 12.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.211 |
| SRR9715740 | Leaf | 2.830 |
| SRR9715741 | Leaf | 4.093 |
| SRR9715739 | Root | 0.573 |
| SRR9715742 | Root | 1.727 |
| SRR9715743 | Root | 1.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.757 |
| SRR8749028 | MeJA induced 9h | 13.522 |
| SRR8749029 | MeJA induced 9h | 11.232 |
| SRR8749030 | Uninduced | 8.858 |
| SRR8749031 | Uninduced | 5.254 |
| SRR8749032 | Uninduced | 4.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.896 |
| SRR8400027 | Control - Root | 6.816 |