Gene detail information of Glyur000392s00023191 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13810.1 | 1.00E-39 | Restriction endonuclease, type II-like superfamily protein |
| NR | XP_003597037.1 | 1.15E-85 | hypothetical protein MTR_2g088950 [Medicago truncatula] |
| trEMBL | tr|G7IKL8|G7IKL8_MEDTR | 4.00E-86 | Type II superfamily restriction endonuclease {ECO:0000313|EMBL:AES67288.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00392 | 34840 | 38429 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000392s00023191.1 | PF09588.5 | YqaJ | 35 | 103 | 3.30E-11 |
| Glyur000392s00023191.2 | PF09588.5 | YqaJ | 48 | 137 | 7.90E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.313 |
| SRR1783600 | control | 2.486 |
| SRR1783602 | moderate drought stress | 2.374 |
| SRR1811619 | moderate drought stress | 2.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.679 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.863 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.157 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.606 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.827 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.935 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.285 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.791 |
| SRR2868004 | Drought Stress (root) | 2.391 |
| SRR2967015 | Control (root) | 2.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.228 |
| SRR9715740 | Leaf | 4.795 |
| SRR9715741 | Leaf | 2.075 |
| SRR9715739 | Root | 0.107 |
| SRR9715742 | Root | 0.848 |
| SRR9715743 | Root | 0.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.315 |
| SRR8749028 | MeJA induced 9h | 0.534 |
| SRR8749029 | MeJA induced 9h | 0.338 |
| SRR8749030 | Uninduced | 0.897 |
| SRR8749031 | Uninduced | 0.419 |
| SRR8749032 | Uninduced | 0.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.042 |
| SRR8400027 | Control - Root | 3.277 |