Gene detail information of Glyur000391s00016081 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23420.1 | 5.00E-06 | high-mobility group box 6 |
| NR | XP_006288568.1 | 5.25E-08 | hypothetical protein CARUB_v10001858mg [Capsella rubella] |
| Swissprot | tr|Q8LDF9|HMGB7_ARATH | 8.00E-08 | High mobility group B protein 7 |
| trEMBL | tr|R0FHK4|R0FHK4_9BRAS | 2.00E-08 | Uncharacterized protein {ECO:0000313|EMBL:EOA21466.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00391 | 173189 | 174066 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.165 |
| SRR1783600 | control | 2.886 |
| SRR1783602 | moderate drought stress | 25.411 |
| SRR1811619 | moderate drought stress | 22.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.789 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.030 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.045 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.679 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.968 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.652 |
| SRR2868004 | Drought Stress (root) | 0.670 |
| SRR2967015 | Control (root) | 0.682 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.221 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.575 |
| SRR9715742 | Root | 2.174 |
| SRR9715743 | Root | 1.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.701 |
| SRR8749028 | MeJA induced 9h | 5.622 |
| SRR8749029 | MeJA induced 9h | 0.357 |
| SRR8749030 | Uninduced | 1.134 |
| SRR8749031 | Uninduced | 0.312 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.283 |
| SRR8400027 | Control - Root | 3.786 |