Gene detail information of Glyur000391s00016074 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42850.2 | 8.00E-44 | Thioredoxin superfamily protein |
| NR | NP_001239644.1 | 3.85E-86 | uncharacterized protein LOC100785157 [Glycine max] |
| Swissprot | tr|Q9FMN4|TCLOT_ARATH | 6.00E-55 | Thioredoxin-like protein Clot |
| trEMBL | tr|C6SWX2|C6SWX2_SOYBN | 1.00E-86 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G42660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00391 | 154276 | 155681 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000391s00016074.1 | PF06110.6 | DUF953 | 11 | 129 | 3.20E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 247.172 |
| SRR1783600 | control | 248.959 |
| SRR1783602 | moderate drought stress | 215.421 |
| SRR1811619 | moderate drought stress | 216.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 145.981 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 144.132 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 107.854 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 104.317 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 129.752 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 128.714 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 68.332 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 68.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 79.696 |
| SRR2868004 | Drought Stress (root) | 80.412 |
| SRR2967015 | Control (root) | 132.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 75.590 |
| SRR9715740 | Leaf | 55.290 |
| SRR9715741 | Leaf | 83.078 |
| SRR9715739 | Root | 93.519 |
| SRR9715742 | Root | 122.452 |
| SRR9715743 | Root | 116.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.399 |
| SRR8749028 | MeJA induced 9h | 20.009 |
| SRR8749029 | MeJA induced 9h | 35.600 |
| SRR8749030 | Uninduced | 22.791 |
| SRR8749031 | Uninduced | 15.655 |
| SRR8749032 | Uninduced | 34.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 109.126 |
| SRR8400027 | Control - Root | 110.263 |