Gene detail information of Glyur000391s00016073 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59550.1 | 3.00E-92 | Rad21/Rec8-like family protein |
| NR | XP_004515558.1 | 0 | PREDICTED: sister chromatid cohesion 1 protein 3-like [Cicer arietinum] |
| Swissprot | tr|Q9FQ19|SCC13_ARATH | 1.00E-107 | Sister chromatid cohesion 1 protein 3 |
| trEMBL | tr|K7L6V5|K7L6V5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G16091.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00391 | 148369 | 152858 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000391s00016073.1 | PF04825.8 | Rad21_Rec8_N | 1 | 111 | 5.40E-37 |
| Glyur000391s00016073.1 | PF04824.11 | Rad21_Rec8 | 631 | 681 | 3.60E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.046 |
| SRR1783600 | control | 2.152 |
| SRR1783602 | moderate drought stress | 1.688 |
| SRR1811619 | moderate drought stress | 1.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.501 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.424 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.621 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.766 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.689 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.639 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.310 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.383 |
| SRR2868004 | Drought Stress (root) | 2.968 |
| SRR2967015 | Control (root) | 2.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.251 |
| SRR9715740 | Leaf | 0.136 |
| SRR9715741 | Leaf | 0.533 |
| SRR9715739 | Root | 0.284 |
| SRR9715742 | Root | 0.553 |
| SRR9715743 | Root | 0.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.891 |
| SRR8749028 | MeJA induced 9h | 5.326 |
| SRR8749029 | MeJA induced 9h | 2.711 |
| SRR8749030 | Uninduced | 0.334 |
| SRR8749031 | Uninduced | 0.475 |
| SRR8749032 | Uninduced | 0.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.502 |
| SRR8400027 | Control - Root | 2.564 |