Gene detail

Gene detail information of Glyur000391s00016072

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52150.2	2.00E-80	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_004515536.1	4.40E-124	PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cicer arietinum]
COG	YP_003797161.1	5.00E-17	RNA-binding protein [Candidatus Nitrospira defluvii]
Swissprot	tr\|P82277\|RRP2_SPIOL	4.00E-95	30S ribosomal protein 2, chloroplastic (Precursor)
trEMBL	tr\|V7BSX0\|V7BSX0_PHAVU	5.00E-117	Uncharacterized protein {ECO:0000313\|EMBL:ESW21069.1}

Sequence

Transcript Sequence

>Glyur000391s00016072.1
AAAATGTATTTCCATTTCCCACGCTACTCACCAAGATAACAAGATAAACCTCTGAATCTGATGCTACAAAGACAAAACCCGTTTCCATTTCATTTGCTGTTGTGGCTTTGATTGTATCCATTCCTCGTAACAGCACAAGGGATGGCTTCTGTGCCTTCTTCTCTGCTCTCACAACCCAACTTCCTTTCCCTCACATCATCAAGAAGTCACCGCANCACTCACACCACGCTGTTGAACTTGAACTTGAGACCCCCGCAACTGCAACTGGTGGCGCTTCCTTCTTCCCTCGCCCCCNCGACGTTGACACGCCGTTTTCCGAGACCCTATGCGGTGGCTGAGCAAGCCTCGGTGACCTCTCCTTCGGACCCCAATTCNGAGGCTGCCAGGAGGCTCTACGTTGGCAACATTCCTCGCTCTCTCACCAACGATGAGCTTGCAAAGATTGTTCAAGAGCATGGCGCTGTTGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGTCGTCGCTTTGCATTTGTTACAATGAAAACCATTGAGGATGCAAATGCAGCAATTGAGAAACTAAATGGCACGGAAATTGGAGGGCGTGAGATTAAAGTAAATATAACCGAAAAACCTTTATCAACAGCAGAGTTGTCTTTACTCCAGGCTGAATCCGANTATGTTGACAGTCCCCACAAGGTATATGTGGGAAATCTGGCAAAGACAGTAACAACTGATTCCCTTAAACAATTCTTCTCTGAGAAAGGAAAAGTTCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACCTCAAAATCAAGTGGCTTTGGTTTTGTTACTTTTTCATCAGATGAGGATGTAGAANCTGCAATCTCGTCTTTAAACAATGCTTTGTTAGATGGGCAAAAAATTCGTGTGAATAAGGCGTAGAGAATTAGCGATGTCGCGGAGCATGTTTGACCATGTGTCCTCTAGCTGGAGCAAAGTATACTGTGTGTGAAGCTGAAATCACAAGCCAATGGCTTTGTTTCTTTTACAGCATAAACCTAATCCTTATGAAGTTCTAAGGAGACGCATGATTGTAACATAGTGCTTAATGAGTTAATGATTCTGTTGCAGGCATTGCAGCGTCTCAGGTCCTCATTTAGTCCAGGATTTTGAGACCTCACTACTCTCTTCATGATTACATTGCTCCGTTTTATTCTGTTTTGTTGTGTCAAGTCTTGTTAATGTATCTGTTGTATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00391	140958	143527	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000391s00016072.1	PF00076.17	RRM_1	84	154	1.40E-21
Glyur000391s00016072.1	PF00076.17	RRM_1	183	253	3.10E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.947
SRR1783600	control	14.105
SRR1783602	moderate drought stress	8.490
SRR1811619	moderate drought stress	8.391

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.745
DRR006520	Root Summer glycyrrhizin high producing strain	14.660
DRR006521	Root Winter glycyrrhizin high producing strain	13.226
DRR006522	Root Winter glycyrrhizin high producing strain	12.821
DRR006523	Root Summer glycyrrhizin low producing strain	15.995
DRR006524	Root Summer glycyrrhizin low producing strain	16.408
DRR006525	Leaf Summer glycyrrhizin high producing strain	137.642
DRR006526	Leaf Summer glycyrrhizin high producing strain	136.897

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.068
SRR2868004	Drought Stress (root)	7.423
SRR2967015	Control (root)	10.138

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	57.881
SRR9715740	Leaf	91.217
SRR9715741	Leaf	40.072
SRR9715739	Root	5.974
SRR9715742	Root	4.349
SRR9715743	Root	5.273

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.565
SRR8749028	MeJA induced 9h	16.627
SRR8749029	MeJA induced 9h	12.570
SRR8749030	Uninduced	8.502
SRR8749031	Uninduced	12.759
SRR8749032	Uninduced	9.755

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.402
SRR8400027	Control - Root	14.527