Gene detail information of Glyur000391s00016055 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G26880.2 | 8.00E-85 | AGAMOUS-like 26 |
| NR | XP_004513802.1 | 1.11E-140 | PREDICTED: putative tRNA (cytidine(34)-2'-O)-methyltransferase-like [Cicer arietinum] |
| COG | YP_007128856.1 | 7.00E-45 | RNA methyltransferase, TrmH family, group 2 [Gloeocapsa sp. PCC 7428] |
| trEMBL | tr|I3S4V5|I3S4V5_LOTJA | 1.00E-140 | Uncharacterized protein {ECO:0000313|EMBL:AFK35297.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00391 | 64185 | 68450 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000391s00016055.1 | PF00588.14 | SpoU_methylase | 131 | 262 | 6.00E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.457 |
| SRR1783600 | control | 7.588 |
| SRR1783602 | moderate drought stress | 5.324 |
| SRR1811619 | moderate drought stress | 5.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.571 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.517 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.131 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.908 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.569 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.662 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.917 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.554 |
| SRR2868004 | Drought Stress (root) | 10.529 |
| SRR2967015 | Control (root) | 15.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.443 |
| SRR9715740 | Leaf | 12.676 |
| SRR9715741 | Leaf | 10.882 |
| SRR9715739 | Root | 3.309 |
| SRR9715742 | Root | 3.600 |
| SRR9715743 | Root | 3.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.639 |
| SRR8749028 | MeJA induced 9h | 7.176 |
| SRR8749029 | MeJA induced 9h | 4.773 |
| SRR8749030 | Uninduced | 3.522 |
| SRR8749031 | Uninduced | 0.992 |
| SRR8749032 | Uninduced | 1.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.239 |
| SRR8400027 | Control - Root | 13.348 |