Gene detail

Gene detail information of Glyur000391s00016054

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20820.1	6.00E-126	Leucine-rich repeat (LRR) family protein
NR	XP_004514841.1	0	PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Cicer arietinum]
COG	YP_001192956.1	4.00E-39	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q00874\|DR100_ARATH	4.00E-159	DNA-damage-repair/toleration protein DRT100 (Precursor)
trEMBL	tr\|Q708X5\|Q708X5_CICAR	0	Leucine rich repeat protein {ECO:0000313\|EMBL:CAE76632.1} (Precursor)

Sequence

Transcript Sequence

>Glyur000391s00016054.1
ATGGCTTCGTTGCTAATATCTGTAACGGTCATTCTGGCCGCCGCGGTGGTCGTCGCCGTCAACGGCTGTTCTCCGTCGGACAGGGCGGCGCTGGTGGCATTCAGGAAGGCGCTGAACGAGCCCTACCACGGCATCTTCAACTCGTGGTCCGGCGATAACTGCTGCGTGAACTGGTACGGCGTCAGCTGCGACGCCACCACCGGCCGCGTCACGGACATCAACCTCCGCGGCGAGTCAGAGGACCCAATCTTCGAGAAGTCTGGCCGCTCCGGCTACATGACCGGGAAAATCTCGCCGGAGATCTGCAAGCTCGACCGCCTCACCACACTCGTCGTCGCCGACTGGAAGGCCATCTCCGGCGTCGTCCCTCCCTGCGTCACCTCCCTCCCCTCACTCCGCATCCTCGACCTCATCGGGAACCAAATCTCCGGCGAGATTCCCTCCGACGTCGGGAAGTTGCAGCGCCTCACTGTCCTGAACCTCGCCGACAATGCCATCTCCGGCGGGATTCCGGCGTCCATCGTCGACCTCGCGTCCCTCAAGCACCTCGACCTCAGCAATAACCGTCTCTGTGGAGAGATTCCCGCTAATTTCGGGAAACTCAGCATGCTGAGCCGCGCGTTGCTGAGCCGGAACCAGCTCTCCGGTTCGATCCCGGTTTCCATATCGAAAATTTACTGGCTCGCGGACTTGGATTTGTCCANGAACCGGTTAACCGGTTCGGTTCCAGCTGAGCTGGGCCGAATGCCGGTTCTTTCAACTTTAAATTTGGATAGCAACTCGCTTTCGGGTCAAATACCTCCGAGTTTGTTGAGCAACTCGGGTATAGGTATCCTGAACCTGAGTCGAAACGGGTTTGAGGGTACCATACCGGATGTTTTCGGTCCAAAGACTTATTTCATGGCTTTGGATTTNTCGTATAACGGTTTAAAGGGTCGGGTACCCGGTACGTTGTCTTCGGCGAAGTATATTGGGCATTTGGATCTTAGCCACAACCACTTATGTGGTTCTATCCCATTGGGCTCACCCTTTGATCACCTTGAAGCGTCGTCGTTTAGCTACAACGATTGTTTGTGTGGAAACCCTTTGAAAATTTGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00391	60822	61922	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000391s00016054.1	PF08263.7	LRRNT_2	25	64	4.50E-11
Glyur000391s00016054.1	PF13855.1	LRR_8	130	190	2.80E-10
Glyur000391s00016054.1	PF00560.28	LRR_1	252	273	0.6
Glyur000391s00016054.1	PF00560.28	LRR_1	326	341	0.2

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	84.009
SRR1783600	control	85.648
SRR1783602	moderate drought stress	42.265
SRR1811619	moderate drought stress	42.834

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.754
DRR006520	Root Summer glycyrrhizin high producing strain	43.476
DRR006521	Root Winter glycyrrhizin high producing strain	0.404
DRR006522	Root Winter glycyrrhizin high producing strain	0.241
DRR006523	Root Summer glycyrrhizin low producing strain	18.451
DRR006524	Root Summer glycyrrhizin low producing strain	17.904
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.642
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.702

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.859
SRR2868004	Drought Stress (root)	14.298
SRR2967015	Control (root)	26.051

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.497
SRR9715740	Leaf	0.245
SRR9715741	Leaf	5.981
SRR9715739	Root	177.714
SRR9715742	Root	54.030
SRR9715743	Root	75.109

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.975
SRR8749028	MeJA induced 9h	3.975
SRR8749029	MeJA induced 9h	6.092
SRR8749030	Uninduced	0.644
SRR8749031	Uninduced	0.058
SRR8749032	Uninduced	0.535

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	119.225
SRR8400027	Control - Root	155.493