Gene detail

Gene detail information of Glyur000391s00016047.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57670.1	1.00E-88	C2H2-type zinc finger family protein
NR	XP_003531439.1	4.30E-166	PREDICTED: protein TRANSPARENT TESTA 1-like [Glycine max]
Swissprot	tr\|Q9SVY1\|ZWIP2_ARATH	1.00E-109	Zinc finger protein WIP2
trEMBL	tr\|I1KTM1\|I1KTM1_SOYBN	2.00E-166	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G16390.1}

Sequence

Transcript Sequence

>Glyur000391s00016047.1
AAAAATTGGTTCTTCTTAATGGCTCTCTCTTCTATTTCCCTCCCACAATACTCTCTCTCTCTCCACATGCGCTCAATATATTTATACATGACTCTAACAACAACTGGCCAAAGATCAAAATTAAACCATCTAAGCAATAACTAGCTATGACAGATCCTCAGTCCAAATTATACACTAGATGGTTCCACTTTACACCCCTCCATCCTCACTACTCTTCTCTTGCTTCTCATTCTAACTTCTCCTCCTCCTCCTCCTCCTATCCTCTTGCATACTCAAACAGCAGATTTTCCATTCAATTTGAAACCTCTTCCTCCTCTGCAGCTCCTCCTCCTCATTCCCCTCCTCTCAGAGAAGCCCTTCCTCTGATAAACAATATAAGCCTCACAAAACAGAAGGAAAATGAACCCTCAAACTCAAACAGTACTACTTGCCATGTTGAAGAGGAAAGGGACAGAGATGAGAAGCATTTGATCACTGGTGCTGATCATCAANATTTTGTTGATGATGAAACTGTGACTGTGGCACTGCGCATAGGGCTTCCTAGCATGGCTAGTACTTCTGGTGTGGGATCAAGGAAGATCTCAACCTGTGCACAAATGGCTGAAAAGGGGGAAAGGAGTGTGGTTTCTGGACACCCTTTGGAAAGATTCAACAAGGTTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGCCCAACTCAGTTCTCATGTTCTGTGTGCTCCAAGACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAGTACAGAAAGGGGCCTGATTCTCTGAAGGGAACACAACCATCAGCAATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCACTAAAGGATTTCAGAACTCTCCAAACACATTACAAGAGAAAGCATGGAACGAAGCCTTACATGTGCAGAAAACTATGTGGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAAATTTGGTATTGTTTATGTGGGTCTGATTTTAAGCACAAAAGGTCTCTAAAAGACCACGTAAGGTCCTTTGGACAAGGACACGGAGCTATTATTGACATTGATTGCTTGCAAGAAGATGATGAAGCAGACTCTGAGTTTGAGCATGATGGGGATAGCTCATTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00391	32575	34980	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000391s00016047.1	PF13894.1	zf-C2H2_4	188	207	0.00036
Glyur000391s00016047.1	PF13894.1	zf-C2H2_4	274	295	0.59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.986
SRR1783600	control	9.094
SRR1783602	moderate drought stress	10.406
SRR1811619	moderate drought stress	10.227

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.167
DRR006520	Root Summer glycyrrhizin high producing strain	2.324
DRR006521	Root Winter glycyrrhizin high producing strain	0.277
DRR006522	Root Winter glycyrrhizin high producing strain	0.271
DRR006523	Root Summer glycyrrhizin low producing strain	5.312
DRR006524	Root Summer glycyrrhizin low producing strain	5.459
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.356
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.310

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.009
SRR2868004	Drought Stress (root)	0.412
SRR2967015	Control (root)	0.290

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.867
SRR9715740	Leaf	3.397
SRR9715741	Leaf	2.528
SRR9715739	Root	1.884
SRR9715742	Root	5.769
SRR9715743	Root	4.213

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.276
SRR8749028	MeJA induced 9h	1.137
SRR8749029	MeJA induced 9h	1.841
SRR8749030	Uninduced	0.277
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.392
SRR8400027	Control - Root	3.233