Gene detail information of Glyur000391s00016046 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63540.1 | 2.00E-63 | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein |
| NR | NP_001235041.1 | 1.24E-124 | uncharacterized protein LOC100305670 [Glycine max] |
| Swissprot | tr|P82658|TL19_ARATH | 2.00E-103 | Thylakoid lumenal 19 kDa protein, chloroplastic (Precursor) |
| trEMBL | tr|I1KTL9|I1KTL9_SOYBN | 1.00E-125 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G16370.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00391 | 29680 | 30411 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000391s00016046.1 | PF01789.11 | PsbP | 148 | 238 | 3.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.525 |
| SRR1783600 | control | 30.095 |
| SRR1783602 | moderate drought stress | 21.783 |
| SRR1811619 | moderate drought stress | 22.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.364 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.936 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.864 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.856 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.888 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.192 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 304.282 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 300.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.002 |
| SRR2868004 | Drought Stress (root) | 20.766 |
| SRR2967015 | Control (root) | 17.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 119.595 |
| SRR9715740 | Leaf | 130.326 |
| SRR9715741 | Leaf | 122.936 |
| SRR9715739 | Root | 33.356 |
| SRR9715742 | Root | 25.679 |
| SRR9715743 | Root | 22.701 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.295 |
| SRR8749028 | MeJA induced 9h | 12.881 |
| SRR8749029 | MeJA induced 9h | 11.514 |
| SRR8749030 | Uninduced | 4.795 |
| SRR8749031 | Uninduced | 3.228 |
| SRR8749032 | Uninduced | 8.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.141 |
| SRR8400027 | Control - Root | 23.678 |