Gene detail

Gene detail information of Glyur000391s00016045.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08505.2	2.00E-85	zinc finger (CCCH-type/C3HC4-type RING finger) family protein
NR	KHN07702.1	0	Zinc finger CCCH domain-containing protein 69 [Glycine soja]
Swissprot	tr\|E0X9N4\|C3H69_ARATH	9.00E-104	Zinc finger CCCH domain-containing protein 69
trEMBL	tr\|I1MJM7\|I1MJM7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G42820.1}

Sequence

Transcript Sequence

>Glyur000391s00016045.1
ATGGGTCGCATCGCACCTAGGGTTTGCAAGTTCTACGCCCGTGGGGTATGTTTGAAAGGGGAGCAATGTGANTTTTCTCACCAGAGAAAGGACACTCCTGTTGATATTTGCTCTTATTATCGGAAAGGATTTTGCGCATATGGCAGTCGATGCAGATATAAGCATGNCAAAGCTTCTCAAGGATCATCTTCATCCGATGGTCGCCAATCTCTGGTTTCAGATTCTGTGGTGGCTCGTAGTACTAAGGGAATATCAAATTGGGTTCCNAAGGCTACAAAGCTGTCTTCACCCGACAAGCGTGCAAGGAGTTCACCGCGTAAGCAGCAGGACTCTGTGGGGAATAATGATGTTGGTGAATCCAGTACTGCTAGTGCTAAACTGTCTGTAAATTTCTTTTGTACATTTGCCGCCGCCAACTGCCCCTCAGGAGATAAGTGTTCTCTTGTTCATGGAAATCAATGTTTGTACTGTAAAAAGTATTGCTTGCATCCCACTGATCGAAAGGAGAAAGAAAATCATTTGAGGACTTGTGAGAAAAAGGAAAAATACCTTCAGGTTTTGAAAGATAGTCAAGAGATAGAATGCAATGTTTGTCTGGAGCGTATCCTTTCCAAACCCAAACCATCTGAATGTAAGTTTGGGTTGCTTCCAGAGTGTGATCATGCTTTCTGTTTATCCTGTATCCGCAATTGGCGTAATAGCGCCCCAACCTCTGGAATNGACATCAATAATAATTCTAATACAGTAAGGAGCTGCCCTGTTTGCCGCAAACTATCATATTTTGTCATTCCAAGTGCTATTTGGTATTTTACAAAGGAAGAAAAACAGGAAATTATTGACAACTACAAGGCAAACTGCAGATTGATTGATTGCAAACATTTTAACTTTGGAAATGGGAATTGTCCATTTGGGGCTAGTTGTTTCTACAAGCATATAGTGAAGCCTGGCTCATACACATGGATACACCACAGGCCACCACCTCAGCATANACCAAACAATTTTGACATGTATGACGTGTTGGATATGCTCAGCGAAGTTGATTTGTCAAGTGGAGAATTTTATTCCATCATGAGGGACTCAGAATTTTTCGATGGCATGGATCCATTCGAGATGATGGCTATATCGGATTCGCTGGCTAGTGGATCAGGTCCTTGTTTGAATCCTTTTGATTCTGATGAGGAGGAGGGGGACTTGGATTTTTTCCAGATGGCTGCTCTGTCAGAAGCCCTGGCTTCTGGCGTGGATGATTTCGGCCCTGAAGATTTTGACAATGAAGAATTGAATCCTATGGAGGCGGCCTTGTTATCAATGATGATGCATTCTAATATGGAAGATGAAGAAGAAGAAAGTGATGAAGACTACTAGATTTATTTTAGTTCATATGATGCTCATTTTTAAGCAGTTTTTGAAGTAGTTTCCTTCAACACAGTATGTGACCTTTGTTTTGTTTTGGAAAAATATTGGGCAGGATCTTCAAGATTCTTATTCTGGTTTGTGATATGTTTTAATACTCGTGTCTATAGCCGGTTTTCTCGATCATATTCCATTTTGTATATTTGCCTAAGTCATGCTATTGATGGAGTTTTTGCTTGAGNGTTTTCTTGTGTTGCCTCGTGTTCATGTCGCTCGTTAATTATGATTGAGCTATGCGCAAGGCTGCTTCTTGTTCGCGAAGGCTGTTCATATGCACCAGNCAATCCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00391	24564	28088	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000391s00016045.1	PF00642.19	zf-CCCH	35	56	6.80E-06
Glyur000391s00016045.1	PF13639.1	zf-RING_2	194	256	1.60E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.135
SRR1783600	control	42.148
SRR1783602	moderate drought stress	43.079
SRR1811619	moderate drought stress	43.069

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.570
DRR006520	Root Summer glycyrrhizin high producing strain	42.091
DRR006521	Root Winter glycyrrhizin high producing strain	52.195
DRR006522	Root Winter glycyrrhizin high producing strain	50.812
DRR006523	Root Summer glycyrrhizin low producing strain	36.309
DRR006524	Root Summer glycyrrhizin low producing strain	35.911
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.705
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.904

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.801
SRR2868004	Drought Stress (root)	52.092
SRR2967015	Control (root)	46.830

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.377
SRR9715740	Leaf	28.580
SRR9715741	Leaf	24.206
SRR9715739	Root	34.972
SRR9715742	Root	34.963
SRR9715743	Root	37.401

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.863
SRR8749028	MeJA induced 9h	66.129
SRR8749029	MeJA induced 9h	61.635
SRR8749030	Uninduced	28.744
SRR8749031	Uninduced	26.643
SRR8749032	Uninduced	46.286

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.687
SRR8400027	Control - Root	47.418