Gene detail

Gene detail information of Glyur000391s00016043.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08505.2	2.00E-129	zinc finger (CCCH-type/C3HC4-type RING finger) family protein
NR	XP_004513288.1	0	PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X1 [Cicer arietinum]
Swissprot	tr\|E0X9N4\|C3H69_ARATH	5.00E-177	Zinc finger CCCH domain-containing protein 69
trEMBL	tr\|G7IWL8\|G7IWL8_MEDTR	0	Makorin RING-zinc-finger protein {ECO:0000313\|EMBL:AES69377.2}

Sequence

Transcript Sequence

>Glyur000391s00016043.1
ATCAGACAGGATTTTTGATACGGAGCTGGTGGAGCATTGTGCAACTTGTGCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTGTGGCGGTTCTTTCACCTTATTTTCCATCCAATTCCAAGCTCCAATCTTTCCTTATATTGTATTATCTATATCTATTCTTTTCTTATATCCTATGCCCACCACCATTTATCTCTTCGTGCTCTCAATCTCTTCTTAATTTGAGTGGCCACAAAACCCCACGTGTTAGNCTCCTTCAATTTTTTTATTGCCCCTTTTCTCTATTCAGCCTTTTTCCTCTACCTATAATCACTTTGAGGTTTAGGGTTTAGATCCTCACGCCTCTCGCTTAATTTAAACTTTTCTTCTTTGCAATATCCGCCATGTCTAAGAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCATGTCTGAAAGGGGAGCATTGCGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACTTTTTATCAGAAAGGAGTATGTGCTTATGGAAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGAGCACAGCCCTCCACACCATCTTCTTCAATAATTGAACACCAGCCCCTCGTTTCAGACTCTGTTGTGCTTGGTAATAGTACAATTACATCAAACGATGTTGCTACAGATGCAGACTTTTCTCTTTCCAACAATCCTTACCTCCTTCCCGGTAAACCAGCCTGGAATCAAGAATCTGTGCATAATGACTTTTTAAGGGAAGACGATGTTGGTCAATCTGTAATTTCTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGCAACTGTCCACGAGGGGGNAAATGTCCTCATATTCATGGGGATTTATGCCCCTTATGTGGAAAGCATTGCTTGCATCCTTTCCGATCTGAAGAAAGAGAAGAACATATGAAGAGTTGTGAAAGTAAGCAAAAGCATCTCGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCTTGGAGCGTGTTCTTTCAAAGCCTACAGCTGCTGAACGTAAGTTTGGGCTGTTATCTGAATGTGATCATCCATTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACATTAGGGATGGATGTCAATAGCACACTGAGGGCTTGTCCTATCTGCCGCAAGCTATCGTACTTTGTCATTCCAAGTGTTATTTGGTACACAACAAGTGAAGAAAAACAGGAAATTGTTGATACATACAAGGCAAAGCTCAAGTCAATCGACTGCAAGCATTTTGACTTTGGGGAGGGGAACTGCCCTTTTGGATCCAGTTGCTTCTACAAGCATGCATATCGAGATGGCCGTCTTGAGCAGGTAGTTTTGCGACATCTTGGGGCTGCAGATGGCGATACCNTAATTGCCAAAGACATCAGGTTGTCGGATTTCCTTGCTAACATGCATTTAAGATGAAGGTTGATGTTCATATGTTCTGATGATACTTGCATAAAAATGACATGCTTCAATGTCAAAAGTTATTTTTATATTGCAAGTCAAAGATCNTCTTGTTGTTTCTGTGAGGTAGCAGAGAAAAGAAGCTGCACACTTGCATTCCATCGTTGTAATAAAGTGCCATATGTTAAATGGTAGATGGACATATATATGCTTGCTTGTACGAGGGTGTAATCTCCAATAAGCTCTAACTTTTTAAAGCATACGAAATGAAGTATGGATTGATGGTGGGATAATACTTACTACAGTGTGCACCATTTTAGCCGTCTACCACGAAACTTTAAAAAGCATTTGCTTTTGTGTGGTGGATTTCAATGGTATATATAGAAGTTGATTGGGGCCATGAGATTTTCCTGTTAGCATTACTGAGATCTTAAGATATACATTTTTTTTTGTGAACTGGATTTTCTTGCTGGGTGACATTGCGCCAAGAACATTGGGAACATATTCAACAAATGTATGGATTTTGTTATTACTTACAGGAACTTGTCTGGGGCCTTTTGGGTCTTATATAAGTAACTTCCTTTGTTTCCTTTTTGTTGAATATGCCTAGCATAATCAAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00391	10728	16251	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000391s00016043.1	PF00642.19	zf-CCCH	34	54	1.70E-06
Glyur000391s00016043.1	PF13639.1	zf-RING_2	203	262	1.90E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.590
SRR1783600	control	13.489
SRR1783602	moderate drought stress	17.067
SRR1811619	moderate drought stress	16.243

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.727
DRR006520	Root Summer glycyrrhizin high producing strain	17.402
DRR006521	Root Winter glycyrrhizin high producing strain	42.555
DRR006522	Root Winter glycyrrhizin high producing strain	41.914
DRR006523	Root Summer glycyrrhizin low producing strain	19.136
DRR006524	Root Summer glycyrrhizin low producing strain	19.769
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.128
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.557

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.278
SRR2868004	Drought Stress (root)	23.555
SRR2967015	Control (root)	21.291

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.553
SRR9715740	Leaf	39.753
SRR9715741	Leaf	33.943
SRR9715739	Root	6.553
SRR9715742	Root	12.371
SRR9715743	Root	10.104

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.849
SRR8749028	MeJA induced 9h	16.846
SRR8749029	MeJA induced 9h	10.709
SRR8749030	Uninduced	12.560
SRR8749031	Uninduced	12.136
SRR8749032	Uninduced	8.892

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.526
SRR8400027	Control - Root	18.356