Gene detail information of Glyur000390s00023114 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17680.1 | 3.00E-56 | disease resistance protein (TIR-NBS-LRR class), putative |
| NR | XP_003607698.1 | 0 | Tir-nbs-lrr resistance protein [Medicago truncatula] |
| COG | YP_723316.1 | 1.00E-11 | small GTP-binding protein [Trichodesmium erythraeum IMS101] |
| Swissprot | tr|Q9SZ67|WRK19_ARATH | 3.00E-50 | Probable WRKY transcription factor 19 |
| trEMBL | tr|G7JF29|G7JF29_MEDTR | 0 | Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313|EMBL:AES89895.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00390 | 168635 | 172747 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000390s00023114.1 | PF13855.1 | LRR_8 | 334 | 388 | 1.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.001 |
| SRR1783600 | control | 2.234 |
| SRR1783602 | moderate drought stress | 2.535 |
| SRR1811619 | moderate drought stress | 2.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.700 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.661 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.513 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.302 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.792 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.207 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.380 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.764 |
| SRR2868004 | Drought Stress (root) | 2.778 |
| SRR2967015 | Control (root) | 5.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.349 |
| SRR9715740 | Leaf | 2.647 |
| SRR9715741 | Leaf | 6.368 |
| SRR9715739 | Root | 0.690 |
| SRR9715742 | Root | 3.606 |
| SRR9715743 | Root | 3.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.539 |
| SRR8749028 | MeJA induced 9h | 2.046 |
| SRR8749029 | MeJA induced 9h | 1.715 |
| SRR8749030 | Uninduced | 3.233 |
| SRR8749031 | Uninduced | 5.226 |
| SRR8749032 | Uninduced | 2.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.203 |
| SRR8400027 | Control - Root | 3.261 |