Gene detail

Gene detail information of Glyur000390s00023112

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60910.2	2.00E-31	AGAMOUS-like 8
NR	XP_006593704.1	1.77E-53	PREDICTED: floral homeotic protein APETALA 1-like [Glycine max]
Swissprot	tr\|Q38876\|AGL8_ARATH	2.00E-37	Agamous-like MADS-box protein AGL8
trEMBL	tr\|K7LXP9\|K7LXP9_SOYBN	7.00E-54	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G06811.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00390	157204	165670	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003700 transcription factor activity, sequence-specific DNA binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000390s00023112.1	PF01486.12	K-box	19	110	1.60E-26

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.120
SRR1783600	control	0.111
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.463
DRR006520	Root Summer glycyrrhizin high producing strain	0.486
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.832
DRR006524	Root Summer glycyrrhizin low producing strain	0.870
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.155
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.692

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.228
SRR2868004	Drought Stress (root)	0.374
SRR2967015	Control (root)	0.029

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.360
SRR9715740	Leaf	3.917
SRR9715741	Leaf	0.786
SRR9715739	Root	0.113
SRR9715742	Root	0.119
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.044