Gene detail

Gene detail information of Glyur000390s00023103.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15650.1	4.00E-146	reversibly glycosylated polypeptide 2
NR	XP_007151376.1	0	hypothetical protein PHAVU_004G041600g [Phaseolus vulgaris]
COG	YP_003535748.1	1.00E-07	hypothetical protein HVO_1704 [Haloferax volcanii DS2]
Swissprot	tr\|Q8H8T0\|RGP1_ORYSJ	0	UDP-arabinopyranose mutase 1
trEMBL	tr\|V7C245\|V7C245_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW23370.1}

Sequence

Transcript Sequence

>Glyur000390s00023103.1
ATGGCTGACACTNCTTCTGTGGCACCAACACCACAACTGAAAGATGAGCTTGACATTGTGATCCCAACAATAAGGAACCTCGATTTCTTGGAGATGTGGAGGCCATTCTTTGAGCCTTACCATTTGATCATTGTTCAAGATGGTGACCCTTCAAAAACTATTAAGGTCCCTCCTGGTTTTGATTATGAGCTCTACNACCGCAATGACATCAACAAACTCCTTGGTCCAAGGGCCTCTTGCATCTCCTTTAAGGACTCTGCTTGTCGCTGCTTTGGCTACATGGTTGCCAGTGATCCATCTGGGAAACCAATCAATGCACTTGAGCAGCATATTAAAAACCTTCTGTGTCCATCCACTCCCTATTTTTTCAATACCCTCTATGACCCCTTCAGAGAAGGTGCGGATTTTGTTCGCGGGTATGTGGATGCTGTTCTGACCATACCAAAAGGCACTTTGTTTCCCATGTGTGGAATGAACTTGGCATTNGATCGTGATCTGATTGGACCAGCAATGTATTTTGGTCTCATGGGAGATGGTCAGCCAATTGGACGCTATGATGATATGTGGGCTGGCTGGTGCTGCAAGGTGATCTGTGATCATTTGGGGCTGGGAATCAAGACAGGTCTGCCTTATATCTTTCATAGCAAGGCCAGTAACCCATTTGTGAACCTGAGGAAAGAGTACAAAGGCATATTCTGGCAGGAAGACATCATNCCATTCTTCCAGAATGCTGTTCTCCCAAAAGAATGCACAACTGTTCAAAAGTGCTACATTGAGCTCTCCAAGCAGGTCAANGAAAAGCTATCAAAGGTAGACCCTTACTTTGACAAGCTTGCAGATGCAATGGTCACTTGGATTGAAGCTTGGGATGAACTTAACCCTTCTGGGGCATCTCAGGCCAATGGCAAAGCATAATAAACCACTGATCTTGAAAGTGGAATATTTATATATACTTGTGTACTTTTTCTTAAGTACTTCTTTTGCAGCACTGTTAGCTGTTATATTCTATTTTGTTAAACTTTATGCTTTGTTGAGCTTAGAAACAATAATAATAAAGTACAATGGTCTTAGGTCGTTGTTTTTCTTGTGGTTTTTTGTTCAATGAGTAGAGATCACTGAAGGATCTTACATCATTTGGAAGCACTGAGTGAGTTTCATTGTGAAGCAATTGTTTGTTATAGGAAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00390	63188	66397	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT75

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13379	RGP, UTM	EC:2.4.1.- 5.4.99.30	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

molecular_function
GO:0016866 intramolecular transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000390s00023103.1	PF03214.8	RGP	13	140	2.50E-50
Glyur000390s00023103.1	PF03214.8	RGP	140	295	4.00E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.809
SRR1783600	control	10.953
SRR1783602	moderate drought stress	5.572
SRR1811619	moderate drought stress	5.442

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.607
DRR006520	Root Summer glycyrrhizin high producing strain	30.523
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	9.240
DRR006524	Root Summer glycyrrhizin low producing strain	9.096
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.733
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.747

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.607
SRR2868004	Drought Stress (root)	14.598
SRR2967015	Control (root)	14.192

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.077
SRR9715740	Leaf	1.330
SRR9715741	Leaf	0.406
SRR9715739	Root	20.890
SRR9715742	Root	4.935
SRR9715743	Root	6.906

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.081
SRR8749028	MeJA induced 9h	7.895
SRR8749029	MeJA induced 9h	0.269
SRR8749030	Uninduced	0.027
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.001
SRR8400027	Control - Root	22.751