Gene detail

Gene detail information of Glyur000390s00023101

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02320.1	0	N2,N2-dimethylguanosine tRNA methyltransferase
NR	XP_006603927.1	0	PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 1-like isoform X2 [Glycine max]
COG	YP_004289558.1	5.00E-52	N(2),N(2)-dimethylguanosine tRNA methyltransferase [Methanobacterium sp. AL-21]
Swissprot	tr\|Q9LFU5\|TRM1_ARATH	0	Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1
trEMBL	tr\|K7MWB6\|K7MWB6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G04230.2}

Sequence

Transcript Sequence

>Glyur000390s00023101.1
ATCGTGCTTTGAAACTGCAACTGAAGCTTGCTACAGCGAGTAGTAGAATTGCAACAAACCCTCTTTCTTCGTTCAAGTCTTGGTTTTTCTATAAGCAGAACCATAGAACAAGCAAAAGAGGAAGAGAAGAGAGGAACAGACCCTGAATTTGTTTTTGCATGATATAAGCAGAACAATGACTACGGATCTCAAGGATTATAAAATCATTAAGGAAGGGGAAGCTGAGATTCTTATGCACGCAAAAAATGAAGTCTTCTATAACAAAGCTCAGGTTAATAACAGGGATATATCNATTGCTGTTTTGAGAACATTTATCTCGAAAAGGAAGGAAGAGCATGAAGNGAGATTGTCCAAGAGAACAAAAGGGGCACAAAAGGCATCTGAGAATGATTCTTCTGAATTGGTTGTAGAGGAAGCAGATCACAAAGCTCCACCAGAAGAAGATCATAAATCCAACGGGGAATGCAAATTAGAGGANGAGATGTCTGCAGAGGAACCCTGCAGTACAACGGAAGGTTCAGTTGAGGTCACTGAAGAATGTGGTGCTAGAGAAGTGCAAATTAACCATTTGGAAGGAAAAGGACAGAGGGAGCTGAAGCCACCAAGAGTTCTCGAGGCCTTGTCGGCTTCTGGGTTAAGGGCTCTCAGATATGCTCGTGAAGTAGAAGGGATTGGTCAGGTTGTTGCTCTGGACAATGATAAAGCTTCTGTCGAATCTTGTAGAAGGAACATCAAATTCAATGGTTCAGTTGCAGTTTCAAAAGTGGAGTCTCAGCTTGCGGATGCTCGTGTATATATGCTAACCCACCCTAAAGAATTTGATGTGGTTGATCTTGATCCTTATGGTTCGCCTTCNGTGTTTCTTGATTCAGCAGTTCAATCTGTTGTTGATGGAGGTATGCTGATGTGTACTGCAACAGATATGGCTGTACTCTGTGGGGGGAATGGGGAGGTCTGCTATTCAAAATATGGATCATACCCACTNAGAGGGAAATATTGCCATGAAATGGCTTTGAGGATCGTTCTTGCTTCCATTGAGAGTCATGCTAATCGTTACAAGCGGTATATTGTTCCTGTGCTATCNGTTCAAATGGACTTTTATCTTCGTGTTTTTGTTCGCATATACACTTCTGCCAGTGCTATGAAAAACACTCCCTTGAAGCTTTCATATGTTTANNNNCTGTTATTGGCACCACTTCAACACCTCAGTACATTGAAATTCATATTCATATTTAATACTAGTGTAAGATATTTGCCTGGATATGGTCCTGTTGTTCCTCAAGAATGCAGTGATTGTGGGAAGAAATTCAANATGGGTGGCCCTATATGGTCTGCTCCTATACATGACCAAGAATGGGTGTCTTCTATACTAGCAGACGTGAAAAGTATGAAGGACAGCTATCCTGCTTATGATCGCATATCAGCTGTATTGACTACAATATCGGAGGAATTGCCAGATGTTCCCTTGTTTTTGAGTCTGCATAACCTCTGTGCAACCCTTAAATGCACTTCTCCATCAGCAATTATCTTCCGTTCTGCTGTGATCAATGCAGGATATCGTATATCTGGAACCCACGTTAACCCACTGGGGCTTAAATCAGATGCACCCATGGACGTTATTTGGGATATAATGCGCTGCTGGGTAAAAAATCATCCTGTGAAAGCTCAGCCAGCAGATCAACCCGGAAGTATCATACTTGCAAANGAGCCTGTTCTGCAGGCTAATTTTGCTCGAGCTGTAGCATCTCTTAGCAAGGCACAAGCCAAGAAAGTTGCCAGGTTTCTTCCAAATCCTGAGAGACACTGGGGTCCGAAACTAAGGGCCGGACGACAAATTACTAGCAAGCATGTCTCTCTCTTGGGTCCAGCAGCAATTAATGGAGCTCTCAACCAGGAAGACAATGAAGAAGAACCTAAAAGTAAGAGGCCAAAGACTGAAGATAATGTCACATCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00390	53672	59250	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008033 tRNA processing

molecular_function

GO:0003723 RNA binding

GO:0004809 tRNA (guanine-N2-)-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000390s00023101.1	PF02005.11	TRM	12	487	7.60E-112

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.878
SRR1783600	control	6.808
SRR1783602	moderate drought stress	7.303
SRR1811619	moderate drought stress	6.945

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.803
DRR006520	Root Summer glycyrrhizin high producing strain	17.387
DRR006521	Root Winter glycyrrhizin high producing strain	10.527
DRR006522	Root Winter glycyrrhizin high producing strain	9.303
DRR006523	Root Summer glycyrrhizin low producing strain	17.054
DRR006524	Root Summer glycyrrhizin low producing strain	16.965
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.835
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.623

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.593
SRR2868004	Drought Stress (root)	15.812
SRR2967015	Control (root)	17.622

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.143
SRR9715740	Leaf	10.229
SRR9715741	Leaf	7.000
SRR9715739	Root	2.884
SRR9715742	Root	12.932
SRR9715743	Root	9.802

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.583
SRR8749028	MeJA induced 9h	10.624
SRR8749029	MeJA induced 9h	5.333
SRR8749030	Uninduced	1.732
SRR8749031	Uninduced	1.132
SRR8749032	Uninduced	0.950

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.435
SRR8400027	Control - Root	10.841