Gene detail

Gene detail information of Glyur000390s00023099

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G02210.1	COBRA-like protein 1 precursor
NR	KHN08345.1	Protein COBRA, partial [Glycine soja]
Swissprot	tr\|Q9SRT7\|COBL1_ARATH	COBRA-like protein 1 (Precursor)
trEMBL	tr\|I1N6E2\|I1N6E2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G04210.1}

Sequence

Transcript Sequence

>Glyur000390s00023099.1
GTGAACTTTGCTGAAATTTCTGGAAGCTAGGCCTAGCTAAGTTGCATACATTGGTTTCTTGTCACAGCACATTGACATATTTCTCTGACACACTTTGCCAACTGTACACAACAAAAACAGTCAGCTTCCGCCGCGTTTTTGTGTTCTGTTTCTTCCCCCACGCCACGCTTTCTCTCCTCTTCTATGCCCTTTTCTATTCTTTTTTCTCTTCCATTGTTCTGTTGTTCTGTTTCATAGATCCTGTTCTCATCAATACACACCACTTCTCAGTGCGAAAGGAAAAAAAAATGCTGTTGTTCCCTTTCGGTTTCATGCCCATGATATTATCTTTCCTCAAACCGTGTCCATGCATTCTNTTCCTCTTGTTTCTGCTGTCTTCCACCTCAACAGGCTGGCTGTTTCTCTTTCAGAAGCCTATGATCCACTTGACCCAAATGGAAATATCACAATCAAATGGGATATTATAAGCTGGACACCTGATGGTTATGTTGCTGTTGTTACAATGAACAACTTCCAACAGTATCGTCATATCTCGGCACCTGGATGGTCACTAGGGTGGACATGGGCAAAGAAGGANGTAATATGGACCATGGTGGGAGGGCAGACCACTGAACAAGGAGATTGTTCAAAGTTCAAGGGAAACATCCCACATTGCTGTAAAAAGGATCCGACAGTTGTAGATTTACTTCCCGGAACACCTTACAACCAACAAATTGCGAATTGCTGCAAAGGTGGTGTACTCAGCTCATGGGCACAGGATCCTCCCAATGCAGTTGCAGCATTTCAAGTCAGTGTGGGTAGCGCTGGTACCACTAACAAAACTGTCAGAGTGCCGAAGAATTTCACCTTGAAANCACCGGGACCAGGTTATACATGTGGACCTGCAAAAATTGTGAAGCCTACTAGATTCATACAACCAGACAAAAGGAGAGTGACCCAAGCACTCATGACATGGAATGTGACATGCACATATTCACAATTTCTAGCTCAGAAAACTCCCACTTGTTGTGTCTCCCTCTCATCTTTCTATAATGATACTATTGTACCCTGCCCNACATGTGCGTGTGGNTGCCAGGGCAACTCGTCTCAATCGGGGAACTGTGTAGATCCAGATTCACCACATTTGGCATCAGTTGTTTCCAACCCTGGAAGGACTAGTATTACACCTTTGGTTCAATGTACTNGTCATATGTGCCCGATCCGAATCCACTGGCATATCAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTCACTATTACTAATTTCAACTACAGGATGAATTATTCTGATTGGAACTTGGTTGTCCAACACCCAAACCTCGACAATCTGACCCAAATTTTCAGTTTCAACTATGATGCATTAACTCCCTATGGATCAATAAATGATACAGCAATGCTTTGGGGAATTAAGTTCTACAATGATTTGCTCATGCAAGCTGGCCCTCTCGGTAACGTGCAGTCGGAGCTACTTTTCCGAAAGGATAAATCAACCTTTACTTTTGACAAGGGTTGGGCTTTTCCACGGAGGGTCTACTTCAATGGTGACAACTGTGTGATGCCACCNCCTGATGCTTATCCATGGTTACCCAATTCCGGTTCCCGGCAAGAGGTTTCCCTGCTCGCTTTGATGATGACTTCCTTGGTAGCTTTGGTACTTCATGCATATGCTTAAAAAGTTTCTATCCACGGTACACTCAACTCTTGCAATCTAAAATTTTCAGTCTGACCAGTTTTGACTCGATTTTGGTATATCGGTTTGGGATTCGAACCAAGCTGGAGTATGACGACAATTCAAGAATAGCTCATTTGTCCTATGATTTGTTACTAAGTTTCAGCATATGGGATGAATTTGCTACAATATTGTTACTTCTGTCTCTTGTGAATGTAATGATATATTTATTGGTTTTAGATCCTTAGCGCATTTGGTGCTGTAATTATAAGAAATTTATACAGGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00390	40653	45040	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0010215 cellulose microfibril organization

GO:0016049 cell growth

cellular_component
GO:0031225 anchored component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000390s00023099.1	PF04833.10	COBRA	47	211	8.90E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.840
SRR1783600	control	8.946
SRR1783602	moderate drought stress	4.930
SRR1811619	moderate drought stress	5.037

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.931
DRR006520	Root Summer glycyrrhizin high producing strain	15.188
DRR006521	Root Winter glycyrrhizin high producing strain	17.202
DRR006522	Root Winter glycyrrhizin high producing strain	17.005
DRR006523	Root Summer glycyrrhizin low producing strain	35.324
DRR006524	Root Summer glycyrrhizin low producing strain	34.876
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.141
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.134

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.324
SRR2868004	Drought Stress (root)	8.058
SRR2967015	Control (root)	5.512

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.176
SRR9715740	Leaf	10.032
SRR9715741	Leaf	11.867
SRR9715739	Root	6.681
SRR9715742	Root	36.032
SRR9715743	Root	32.361

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	65.113
SRR8749028	MeJA induced 9h	352.244
SRR8749029	MeJA induced 9h	296.189
SRR8749030	Uninduced	95.586
SRR8749031	Uninduced	172.704
SRR8749032	Uninduced	190.672

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.151
SRR8400027	Control - Root	12.154