Gene detail

Gene detail information of Glyur000390s00023096

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15640.1	8.00E-132	Mitochondrial substrate carrier family protein
NR	XP_004507299.1	0	PREDICTED: solute carrier family 25 member 44-like isoform X1 [Cicer arietinum]
Swissprot	tr\|F4HT41\|SAMC2_ARATH	9.00E-26	Probable S-adenosylmethionine carrier 2, chloroplastic (Precursor)
trEMBL	tr\|A0A072U628\|A0A072U628_MEDTR	0	Substrate carrier family protein {ECO:0000313\|EMBL:KEH25132.1}

Sequence

Transcript Sequence

>Glyur000390s00023096.1
GAAATAAGAAGAGTAGAGGCAAGGCATATAACATATTCCCCGCCGTATATATAAAAACGGGGTTTCGGTTTCATACTTGTTTCGTTTTCATTTTCAAGAGTTTCCCACTCTTCCAAATTGGTAGCTACACTGANACGCGATCGATCTATGAACTCTTCGCTGCTCTGCTAAATCTCTCAACTCTCCAATTCCAATCCAATGGCCGCTCCTTCAGAGATTAACTGGGACAGGCTAGATAAAACAAAATTCTATGTCGTAGGAGCTGGACTCTTTACAGGTATTACTGTGGCACTCTACCCTGTTTCTGTTGTGAAGACTCGGATGCAGGTTGCTTCAAAGGATACGTTGGAGAGAAGTGCATTTTCGGTCATCAAAGGATTGCTTAAGACGGATGGCATCCCTGGTTTGTATAAAGGGTTTGGCACTGTCATCACTGGCGCAGTTCCTGCCAGAATTATATTCCTCACTGCCTTAGAGACCACAAAGGTGGCTTCCTTCCGGATGCTTGAGCCATTTAGTCTATCTGAAACTACCCAGGCTGCCATCGCGAATGGAGTTGCAGGCATGGCATCATCGATTTTGTCACAAGCTGTGTTTGTTCCGATTGATGTGGTTAGCCAAAGGTTGATGGTGCAAGGATACTCAGGCCATGCTCAGTATAGTGGGGGTTTGGATGTTGNTCGTAAGGTGATAAGGTCTGAGGGCATCAGGGGATTATATAGAGGNTTTGGTCTATCTGTTATGACTTATTCACCATCTAGTGCTGTATGGTGGGCAAGTTATGGCTCAAGTCAACGCGTCTTATGGAGATTTTTGGGAGATGATGTCAAATCTGAGAAAGGTAATCCTAGTCTGCCAAAGATTATATTAGTTCAGGCAGCTGGGGGGATTATTGCTGGTGCTACTGCATCGTGCATTACAACTCCGTTGGATACTATCAAGACACGGTTACAGGTGATGGGACATGAAAAGAGAAGCTCTGTAAAACAAGTTGTTAAAGACTTGATCAAGGAGGATGGTTGGAAAGGCGTATATAGGGGATTAGGTCCAAGATTTTTCAGCATGTCAGCATGGGGTACTTCAATGATACTGGCTTATGAATATCTGAAGCGCCTGTGTGCAAAAGATGAAGAAGATGTTGGATATGCACACAATGATCCTACAACTTGAACACTGGATTTGCTGCTGAACATTTCATTGACTCAAAGGTTAAACTTTGAGCAGGCAGCTATTACTAACTGATTTTTCAGGAAATAATCGTNGGATACACAGATATGGAAATTTTTCCTACTAGAAAATGATCATTTTCATTTTTTTTACATGATTAAATTGGATTAGGTGTATTCTTTTCAAACATTGGTAAGGATAATGTACAATGGGAGGAAAGAGACTGCAATCAGTTTTTGTTTTTCCTTTTCCCTCTAAATGTGTAGTAATTTCATACTTGTGCCTCTAAAGAGATGAATCTGAGGGTTTTTGATGATATTAACCCTTTAGCATGATGNAAACCAAACAATTCCTTTCGGGCTTCTTTCATTCTTCTAGCATGAGCTAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00390	23080	28219	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000390s00023096.1	PF00153.22	Mito_carr	26	97	1.00E-14
Glyur000390s00023096.1	PF00153.22	Mito_carr	115	203	6.70E-20
Glyur000390s00023096.1	PF00153.22	Mito_carr	224	310	2.30E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.155
SRR1783600	control	1.212
SRR1783602	moderate drought stress	1.477
SRR1811619	moderate drought stress	1.482

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.888
DRR006520	Root Summer glycyrrhizin high producing strain	3.791
DRR006521	Root Winter glycyrrhizin high producing strain	2.010
DRR006522	Root Winter glycyrrhizin high producing strain	1.939
DRR006523	Root Summer glycyrrhizin low producing strain	3.897
DRR006524	Root Summer glycyrrhizin low producing strain	3.956
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.873
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.746

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.472
SRR2868004	Drought Stress (root)	10.265
SRR2967015	Control (root)	8.233

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.505
SRR9715740	Leaf	8.924
SRR9715741	Leaf	9.472
SRR9715739	Root	1.614
SRR9715742	Root	4.027
SRR9715743	Root	4.338

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.904
SRR8749028	MeJA induced 9h	6.559
SRR8749029	MeJA induced 9h	4.506
SRR8749030	Uninduced	4.843
SRR8749031	Uninduced	2.317
SRR8749032	Uninduced	1.684

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.628
SRR8400027	Control - Root	6.749