Gene detail

Gene detail information of Glyur000389s00028193

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02010.1	1.00E-145	RHO guanyl-nucleotide exchange factor 7
NR	XP_007140456.1	0	hypothetical protein PHAVU_008G113800g [Phaseolus vulgaris]
Swissprot	tr\|Q9LZN0\|ROGF7_ARATH	0	Rop guanine nucleotide exchange factor 7
trEMBL	tr\|V7B4E0\|V7B4E0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW12450.1}

Sequence

Transcript Sequence

>Glyur000389s00028193.1
ACCAGACATGGTTTGACAACTTTATGGATAGTACTATCACCCAACTAGAACNTAGAGAACAAACCCAACAACATCTGAAGAAGCAGCATTGTGCCCCATTGGTAAGGCTTAGAAGAAGGTCNACAACAAATCCTAACCCATTTGCCATTCTGGTTTTCTGGGTGTCTAAATCTCTTCGAAGTTTGTGTTTCAGAGTTCAACTCTCACAAGGGTTTTGCTTGAGAAGGATTCAGTATCATCATGGAATGGTGATTAATAACACCTCTGTCATCTATGCTTCTTCTGAAGAAGAAGGGAAAGAAGCTGTTGCTGCAATGGAAGAGGGTTTGAGTTTGGCTGAGAAGAAGAATGAGGAAGTTGTTGAGGAGAATGAGGGAAGTAGCAATGGTGTTGGTAAAAAGGGAACTTTTGCTGATTTGGTTGAAGAAAGGGGTCGTGAGAGCAGTTTCAGCTCTGAGTTTCTGTCATCTGAGACCACTGGTCATGAAGAACATAGTCAGAGTAGCACTGAGGAAGATTCTTCTTCAACACCTTCAATGGGGTGGCCGGTTCAGGAGGTTGCNGCATCAGATTGTGCAAGTCCTCATGGAAGTGAAGATGGTGAGAAGAAACACNTGGAGAATAAGGAGTTTGAGAAACAAGTTTCAGCAGCATTACCAGAGATTGAGATGATGAAGGAGAGGTTTGCAAAATTGTTACTTGGAGAAGATATGTCAGGTTGTGGAAATGGGGTCCCTACAGCCTTGGCTATCTCAAACGCCATAACTAATCTATGTGCTACCCTCTTTGGGCAACTTTGGAGATTAGAGCCTATGCGTACCGAGAAGAAAGTGATGTGGCGAAGAGAGATGGAGTGGCTTCTTTCTGTCAGTGATCATATAGTTGAATTAACACCTAATTGGCAGACCTTTCCGGATGGAAGCAAGCTTGAGGTCATGACTTGTCGACCCCGCTCAGATCTCTATGTCAATCTTCCAGCTCTGCGCAAATTAGATAACATGCTTCTTGAAATTCTAGATAGTTTCGTCGATACAGAGTTCTGGTATGTAGACCAAGGTGTTCTAGCTCCAGANTCTGATAGTCCATCTTCTTTTCGGCAAGCACTTCAGCGACAAGAGGAGAAATGGTGGCTTCCCGTGCCCCGAGTCCCTCCTTGTGGCCTCCATGAAAATTCAAGAAAGCAATTGCAGCATAAGCGTGATTGCACAAGCCAAATATTAAAGGCTGCTATGGCTATTAACAGTATTACTTTAGCTGAAATGGACATTCCTGAGTCTTATTTAGAATCTCTTCCAAAGAATGCTAGACTCAGCCTTGGGGATGTTATTCATCGTTATATCACATCGGATCATTTTTCTCCTGAGTGTTTGCTAGCTTGCCTTGATTTATCTTCTGAACATCAAGCTATAGAGATCGCGAACCGAGCAGAGGCTTCCATGTATATTTGGCGTAGTAAAAAGACCAATTCAAAGCCTGCAAGTCATGTCAGTGCCAGATCTAGCTCAAGAACATCATGGGAAATGGTCAAGGATCTAATGGTTGATGGAGACAAGAGGGANTTGTTTGCAGATAGAGCAGAAAGCCTTCTGCATTCCTTGAAGCAGCGTTTTCCCGGATGTTGGGAAAGCCATTCTGGAGAGCTATTCGCGAGTACTCGAGAGCTTGGCATTTAACATGGTGGCGCGGATNGATGATGTGCTCTATGTAGATGACTTGACCAAACATTCTGACCAACTCTCATCTCTCTCAAAAGTTGGTGTAATCACTCACAAGAGTGTTAATTCAGTTCCATACTCATTGCCTGTCCCAAGCACTCCATACAAATCAGCTTTCGGCACGCCGACCCTTTCTCCGGCACATGGGATTAGCAGCACTGCAAAGGGAGGAGGAAAATCTCCACTCATCAATGGCAGCAGCAGCAGCAGCAGCACTCCCCAAAGAGGGGTAGGGGTGAAGAAATCATTAACTGATTTCCTTAGCATTGATACAAAAGGGAAGGGCTGTGACAGTTCAAATAAGAAACCAGTTTCAGAATCAAAAACAGTTNATGATGAAGTGCCTGCATTTGAAGCAGATGTGGAATCCAATGATGGTACAGGAGATGCTGCCAGCCCAAATATCATGCACAAGACATGGCAAGTGTGAAAGGCTATTGATCTTTTGTAGCATATAGGCTTTTCTCCAATGGCTATTTTTTTTTTTTTGTTTAATGGGGTCTTACTATGTATATGAAATACGTAGAAGGATTCAGTTTTATTTAGAGTGGATAGTGTTTTATATTGTTTATTACCTCTAATTGGAGTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00389	158427	162331	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005089 Rho guanyl-nucleotide exchange factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000389s00028193.1	PF03759.8	PRONE	212	534	1.20E-152

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.838
SRR1783600	control	2.904
SRR1783602	moderate drought stress	1.955
SRR1811619	moderate drought stress	1.912

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.465
DRR006520	Root Summer glycyrrhizin high producing strain	4.417
DRR006521	Root Winter glycyrrhizin high producing strain	0.145
DRR006522	Root Winter glycyrrhizin high producing strain	0.142
DRR006523	Root Summer glycyrrhizin low producing strain	1.615
DRR006524	Root Summer glycyrrhizin low producing strain	1.689
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.366
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.387

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.300
SRR2868004	Drought Stress (root)	3.077
SRR2967015	Control (root)	4.847

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.830
SRR9715740	Leaf	0.325
SRR9715741	Leaf	0.623
SRR9715739	Root	0.623
SRR9715742	Root	2.930
SRR9715743	Root	2.264

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.610
SRR8749028	MeJA induced 9h	0.216
SRR8749029	MeJA induced 9h	0.348
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.037

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.187
SRR8400027	Control - Root	7.658