Gene detail

Gene detail information of Glyur000389s00028188

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37900.1	2.00E-127	Major facilitator superfamily protein
NR	XP_003623153.1	0	Peptide transporter PTR3-B [Medicago truncatula]
COG	YP_002494545.1	7.00E-14	amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
Swissprot	tr\|P0CI03\|PTR28_ARATH	9.00E-156	Protein NRT1/ PTR FAMILY 5.6
trEMBL	tr\|G7L5K4\|G7L5K4_MEDTR	0	Peptide/nitrate transporter plant {ECO:0000313\|EMBL:AES79371.1}

Sequence

Transcript Sequence

>Glyur000389s00028188.1
CTTATACATAATAAAAAAGGAAAAGCATGTCGTCCTCTATAAAAGGAGGTACCTGAGGTAAAGAAAGATTGTCAGTGCAGTAGACACATCTATAATTTCCATATTATCTCTTCAATTATATTTGAGCTAGCTGGGGAAGGCTAGTGCTTTTCTACTAGCCANCAGCATCAAGCTAGCTAGCTACTCAGCCAGTATTGCAAGATGGAGAAGATAAAAGCAGAAGAAGNTGATGAGATGAAATGGGTTCATGATTCTTCAGTGGATCATAAAGGCAGGATTCCACTCCGAGCTTCAACTGGTTCTTGGAAAGCTGCTCTCTTCATTATCGCAATTGAGTTTAGTGAGAGGTTGAGCTACTTTGGAATAGCAACTAGCTTNGTCCTTTACCTCACAAAGGTTATGCATCAAGACCTTAAGACAGCGGCAAGGAATGTGAACTATTGGTCTGGTGTCACCACTTTGATACCACTGTTTGGTGGATTCATAGCCGATGCATACATGGGTCGTTACTCCACTGTGTTTGCATCATGCATTATCTATCTCATGGGTTTGGTTCTTCTTACTCTGTCATGGTTCATGCCAAGCTTAAAGCCGTGTGATCACACTAACATGTGCACCGAACCAAGGAGAATTCATGAAGTGGTTTTCTTCCTAGCTATCTACTTACTATCTATAGGAACTGGAGGACACAAACCCTCCTTGGAGAGCTTTGGAGCTGATCAATTTGATGAGGATCATGTGGAAGAAAGGCAGCAAAAGATGTCATTTTTCAATTGGTGGAATTGTGCCCTCTGTAGTGGACTTATTCTGGGGGTGACCTTAATTGTTTACATACAGGACAACATAAACTGGGGTGCTGCTGATATCATCTTTACAGGGGTCATGGCTCTCTCACTCCTCATCTTCATAATTGGAAGGCCATTTTATCGCTATAGGATACCAANTGGGAGTCCCTTGACTCCAATGTTGCAGGTCCTTGTTGCTGCCATCTCCAAAAGAAAGCTTCCATATCCTTCTAATCCTGCTCAATTGTATGAGGTTCCCAAGTCTCATAGCAGCAATAGAAGATTTTTGTGTCACACCGAAAAACTCAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00389	96258	102682	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000389s00028188.1	PF00854.16	PTR2	103	288	1.60E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.508
SRR1783600	control	1.584
SRR1783602	moderate drought stress	5.152
SRR1811619	moderate drought stress	5.406

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.518
DRR006520	Root Summer glycyrrhizin high producing strain	9.380
DRR006521	Root Winter glycyrrhizin high producing strain	2.868
DRR006522	Root Winter glycyrrhizin high producing strain	2.841
DRR006523	Root Summer glycyrrhizin low producing strain	11.852
DRR006524	Root Summer glycyrrhizin low producing strain	11.683
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.493
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.395

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	58.530
SRR2868004	Drought Stress (root)	131.774
SRR2967015	Control (root)	116.320

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.507
SRR9715740	Leaf	1.653
SRR9715741	Leaf	2.204
SRR9715739	Root	5.703
SRR9715742	Root	55.423
SRR9715743	Root	43.889

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.916
SRR8400027	Control - Root	34.052