Gene detail

Gene detail information of Glyur000389s00028184

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53940.1	7.00E-123	Mitochondrial substrate carrier family protein
NR	XP_004515948.1	0	PREDICTED: mitochondrial substrate carrier family protein B-like [Cicer arietinum]
Swissprot	tr\|O04619\|ADNT1_ARATH	4.00E-57	Mitochondrial adenine nucleotide transporter ADNT1
trEMBL	tr\|G7L5K1\|G7L5K1_MEDTR	0	Peroxisomal Ca-dependent solute carrier protein {ECO:0000313\|EMBL:AES79368.1}

Sequence

Transcript Sequence

>Glyur000389s00028184.1
CCTCTTCCACGCCTTCGCCCTCGCCCCTTCAGAATCAAAACAAACAAAGGTTGTTTTATTATTTGAAAAAAAAAAGGTTGTTTTAACTCTTCGTTCCTTTTCTTCGTTCACCCTTTAGAAGACCACCGCGATTCCCCATCCCCTTCTCTTCCGGGAACCGCAGCTCGAGGTTTCCGAGGTTAAAATTGCGTTCGAGTANACCAAGGAAAGGAGGGCCTTTTATTTTATTTTTTTGTAAATTATTTATTTACTTAATTTTGGGGTGACTGAAGTATGGAATCACGAGAAGGAGGACATAATAGAGTTGTGAATAACAATCAGCAATCACAAATTGGAACGGTGTCTCAGCTTCTCGCTGGTGGTTTAGCTGGTGCTTTTGGCAAGACCTGCACTGCTCCANTTTCACGCCTCACCATCCTTTTTCAGGTGCAAGGTATGCATTTTGATGTGGGCCATGTGGCAGCACTGAGCAAGCCTAGCATTTGGTGTGAGGCTCAACGAATTGTCAACGAAGAAGGATTTAGAGCGTTTTGGAAAGGCAATTTGGTGACNATAGCTCATCGTCTCCCTTATTCTGCAGTCAACTTCTATGCCTATGAACGCTACAAGAATCTATTACATTCACTCGTAGGGGAGAATCGTAGAGGAAATGCAAGTGCAGACCTCTTTGTGCACTTTGTCAGTGGTGGTTTGTCAGGCATAACAGCTGCTTCTGCCTTATACCCTCTGGATTTAGTGAGAACACGACTTTCAGCACAGAGAAGTGTTGAATACTACAGGGGAATCTCACATGCTTTAAATACTATTTGCAGAGANGAGGGATTCTTTGGTCTGTATAAGGGACTTGGAGCAACATTGTTGGGTGTTGGGCCCTGCATAGCTATAAGTTTTTCTGTTTACGAGAGCTTGCGTTCCTTTTGGAAGTCTCGAAGGCCGGATGATTCTACTGTCATGGTCAGTCTTGCTTGTGGCAGTTTTTCAGGCATTGCATCATCAACAGCAACATTTCCTTTGGATCTTGTAAGGCGAAGGATGCAGTTGGAGGGGGCTGGTGGCCGAGCACGTGTCTATAATACCAGTTTGTTCGGGACATTTGGTCACATAATTCGGAATGAAGGGGTACGAGGTTTGTATAGAGGCATTTTGCCTGAGTACTACAAGGTTGTTCCCAGCGTGGGCATTGTTTTCATGACTTACGAGACATTGAAGATGCTTCTATCAAACATTCAAAGCAACTAGCATACACTATTTTCCATCATATATGATAACTCATCACTTTAGTATAGGAAATTTTGTGGTGTTGGATTTCATCGTGGTAGCCACGGACTCATTTTGGTCTGGGTATAGTTAGTTTTAGTTGAGAGTGAGTGACATCAATTGTGCCAAATCTAAATTTAGGTTGAAATCTTTTTGTAGTTGATTATAAGCAAAATAGTTTTGTTGTAGAACTTGCCACGTTTGAGAATTTCTTCAAGACAAGACTTGGAAGTACCAATATTAGCATTTTGATTATCTTGTAACAAAATGTCCCATCTTTGTAGTCAGTTTTAGGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00389	35704	38944	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000389s00028184.1	PF00153.22	Mito_carr	19	116	3.90E-17
Glyur000389s00028184.1	PF00153.22	Mito_carr	130	218	1.70E-23
Glyur000389s00028184.1	PF00153.22	Mito_carr	223	317	4.70E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.380
SRR1783600	control	1.381
SRR1783602	moderate drought stress	1.613
SRR1811619	moderate drought stress	1.693

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.734
DRR006520	Root Summer glycyrrhizin high producing strain	5.534
DRR006521	Root Winter glycyrrhizin high producing strain	1.503
DRR006522	Root Winter glycyrrhizin high producing strain	1.456
DRR006523	Root Summer glycyrrhizin low producing strain	5.904
DRR006524	Root Summer glycyrrhizin low producing strain	6.021
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.411
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.383

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.887
SRR2868004	Drought Stress (root)	3.498
SRR2967015	Control (root)	3.247

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.712
SRR9715740	Leaf	2.669
SRR9715741	Leaf	0.946
SRR9715739	Root	1.386
SRR9715742	Root	3.757
SRR9715743	Root	4.041

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.360
SRR8749028	MeJA induced 9h	4.861
SRR8749029	MeJA induced 9h	3.651
SRR8749030	Uninduced	0.971
SRR8749031	Uninduced	1.814
SRR8749032	Uninduced	0.957

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.616
SRR8400027	Control - Root	3.861