Gene detail

Gene detail information of Glyur000389s00028181

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52240.2	1.00E-22	RHO guanyl-nucleotide exchange factor 11
NR	KHN05102.1	9.68E-69	Dynein light chain 1, cytoplasmic [Glycine soja]
Swissprot	tr\|Q39580\|DYL1_CHLRE	2.00E-17	Dynein 8 kDa light chain, flagellar outer arm
trEMBL	tr\|K7L1L1\|K7L1L1_SOYBN	4.00E-69	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G16690.2}

Sequence

Transcript Sequence

>Glyur000389s00028181.1
GGGAACTTTTGCAATCATTAATGCAGCATCAACACAACAATGATGCTTTGTTCTGCTAAAAAGAATCTTTGAAAACTTCCAGCTATCAGAACTTACATACACGCCAAAATGGGGAAACTTCAATACTTAAGTTTGGAAGAACATGTTACTCCATGTTGAAAATAAGCTAGCTAAGGTTTATGGCAACTTCTGATTGAAAGAGTGTGCAAACTCATTTGTGGAAATGCTTGCCCGTCAAAAGGGATATTTTTGTTACAACTGTTTTTGGATTGCAACATCTCCAAATGAGTCCAAGATATCATTTTCTATGATGAAAGAAGAAAAGTAAAAAGACTTTTTTTAAGATCAATACAAAAATAAAGAAAACAAAATGGATATAGGGAAGATTTTAANCAATCTAAAAAATCTAGACCACTGAAGATTTTGCCTTGACAAGCAGCTGTGCTTCTTCTATATATGTGGTAGCCAGCAACCAGACGCTTCTGCTGCATTTTTTTTTCTTTTCAATTTGTGCATACTTTTAGAGTGAAGTGATTCCATTACAGCACAAGATGTTGGAAGGAAAAGCTGTGTTGCGAGAGACAGATATGCCAGAGGGGATGCAGAACCATGTTATGGAGTTAGCACACCAAGCTCTCGATGCACATGAAGTTTCTGATTGTCAGTCCATTGCTCATTTCATCAAACAGAAACTTGATGAAGCATATGGACCTGCATGGAATTCTGTGGTTGGCAAAGACTTTGGATCTTGCATTACACATTTAAGTGGAAGTTTCATATTCTTCCGTGTGGAGATGATGGAATTTCTGATTTTCAAAGATGGGAAGGACTTCGGAGAAAGCAGGGAAGAAGCTATTGGAGTGCTGCAGCAGAAAGCTACAAAATAGAGATTCATAAATTCCAAAATTCTAAGAGTATGTCATATTGTCATAGAAGAACCTAAGCTGGTTATTCATTTAATATTTCGAGGGGGGTTGGGGGAAGGAGGTGGTGGGGTTGGAAGTTTNNNNNNNNNNNNNNNNCAGTAATAAAAGGAGCAGACAAAAACAACTGTGGTGCTTCCCAATTATTTCTGGTTATTTGTATGGAATAAGATATTTGTCCACCCTTTGTGTAGNTAGCTACTTGCAAGTAGTTTGACAGTTGCAGTCTCAAGAGTTTAATTTCTTATATCTGATGCGCTCTAATGAACATCATCCATATCAGATTACTAGCCAATGTACGGGTCTTTTCTTAACATAAACAGTAAAAAATCCCAACAAACAAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00389	15684	18375	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007017 microtubule-based process

cellular_component
GO:0005875 microtubule associated complex

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000389s00028181.1	PF01221.13	Dynein_light	1	89	7.90E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.057
SRR1811619	moderate drought stress	0.087

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.351
DRR006522	Root Winter glycyrrhizin high producing strain	0.336
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.595
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.712

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.155
SRR2868004	Drought Stress (root)	0.072
SRR2967015	Control (root)	0.059

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.968
SRR9715740	Leaf	35.442
SRR9715741	Leaf	33.407
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.053
SRR8400027	Control - Root	0.038