Gene detail information of Glyur000388s00027971 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30440.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_003546563.1 | 0 | PREDICTED: BTB/POZ domain-containing protein At1g30440-like [Glycine max] |
| Swissprot | tr|Q9S9Q9|Y1044_ARATH | 0 | BTB/POZ domain-containing protein At1g30440 |
| trEMBL | tr|I1MHT2|I1MHT2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G22510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00388 | 159860 | 164828 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000388s00027971.1 | PF03000.9 | NPH3 | 191 | 457 | 2.30E-101 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.302 |
| SRR1783600 | control | 12.190 |
| SRR1783602 | moderate drought stress | 11.154 |
| SRR1811619 | moderate drought stress | 10.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.896 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.470 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.581 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.510 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.550 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.534 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.921 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.188 |
| SRR2868004 | Drought Stress (root) | 31.581 |
| SRR2967015 | Control (root) | 34.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.928 |
| SRR9715740 | Leaf | 6.401 |
| SRR9715741 | Leaf | 5.896 |
| SRR9715739 | Root | 13.615 |
| SRR9715742 | Root | 18.155 |
| SRR9715743 | Root | 18.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.076 |
| SRR8749028 | MeJA induced 9h | 17.646 |
| SRR8749029 | MeJA induced 9h | 15.636 |
| SRR8749030 | Uninduced | 8.388 |
| SRR8749031 | Uninduced | 7.456 |
| SRR8749032 | Uninduced | 7.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.816 |
| SRR8400027 | Control - Root | 23.151 |