Gene detail information of Glyur000388s00027959 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13940.1 | 4.00E-34 | DNA binding;DNA-directed RNA polymerases |
| NR | XP_006426598.1 | 1.03E-65 | hypothetical protein CICLE_v10025597mg [Citrus clementina] |
| trEMBL | tr|V4RXY9|V4RXY9_9ROSI | 4.00E-66 | Uncharacterized protein {ECO:0000313|EMBL:ESR39838.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00388 | 18449 | 24253 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000388s00027959.1 | PF06870.7 | RNA_pol_I_A49 | 156 | 308 | 3.10E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.452 |
| SRR1783600 | control | 3.452 |
| SRR1783602 | moderate drought stress | 3.818 |
| SRR1811619 | moderate drought stress | 3.940 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.316 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.543 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.481 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.764 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.748 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.264 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.455 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.305 |
| SRR2868004 | Drought Stress (root) | 3.021 |
| SRR2967015 | Control (root) | 4.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.866 |
| SRR9715740 | Leaf | 2.425 |
| SRR9715741 | Leaf | 2.224 |
| SRR9715739 | Root | 1.309 |
| SRR9715742 | Root | 1.538 |
| SRR9715743 | Root | 2.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.274 |
| SRR8749028 | MeJA induced 9h | 7.022 |
| SRR8749029 | MeJA induced 9h | 2.482 |
| SRR8749030 | Uninduced | 2.821 |
| SRR8749031 | Uninduced | 0.890 |
| SRR8749032 | Uninduced | 2.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.506 |
| SRR8400027 | Control - Root | 6.546 |