Gene detail information of Glyur000387s00017720 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42610.2 | 4.00E-71 | Protein of unknown function (DUF640) |
| NR | XP_003540402.1 | 2.98E-98 | PREDICTED: uncharacterized protein LOC100802937 isoform X1 [Glycine max] |
| Swissprot | tr|Q9S7R3|LSH10_ARATH | 4.00E-90 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 |
| trEMBL | tr|I1LUM7|I1LUM7_SOYBN | 1.00E-98 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G33840.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00387 | 170458 | 171024 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000387s00017720.1 | PF04852.7 | DUF640 | 18 | 143 | 5.30E-63 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.801 |
| SRR1783600 | control | 7.830 |
| SRR1783602 | moderate drought stress | 24.795 |
| SRR1811619 | moderate drought stress | 23.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.398 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.576 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.554 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.154 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.766 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 51.366 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.396 |
| SRR2868004 | Drought Stress (root) | 0.417 |
| SRR2967015 | Control (root) | 0.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 24.126 |
| SRR9715742 | Root | 10.503 |
| SRR9715743 | Root | 12.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 86.582 |
| SRR8749028 | MeJA induced 9h | 17.805 |
| SRR8749029 | MeJA induced 9h | 30.248 |
| SRR8749030 | Uninduced | 5.424 |
| SRR8749031 | Uninduced | 1.417 |
| SRR8749032 | Uninduced | 12.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.335 |
| SRR8400027 | Control - Root | 2.616 |