Gene detail

Gene detail information of Glyur000387s00017719.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G58630.1	1.00E-42	sequence-specific DNA binding transcription factors
NR	XP_004505494.1	1.38E-146	PREDICTED: uncharacterized protein LOC101509429 isoform X2 [Cicer arietinum]
Swissprot	tr\|Q9LJG8\|ASIL2_ARATH	4.00E-53	Trihelix transcription factor ASIL2 {ECO:0000305}
trEMBL	tr\|A0A072UNW3\|A0A072UNW3_MEDTR	5.00E-143	Sequence-specific DNA-binding transcription factors protein, putative {ECO:0000313\|EMBL:KEH30728.1}

Sequence

Transcript Sequence

>Glyur000387s00017719.1
GTTGTTGCAAATGCANCAAGGTGTTTGTTTTCCCGCACGGTAAACGACTATCGTCGTACTCGTTCCTATAGCTGCTTCCTCAGTCGGCCTCTCCTCTCCTCTCCCTCTCTGCCTCCCCACCAAACCAAACCCAAACCGCCACCGATTCTCCTGACTCAGCCTCCACCGATGGACTCCGTCGACGGAGCTCCGTCTCCCGCCGCCACCGCTCCGCCGCGTCCACNGTCGTCATCGCCTTTTCCCGGCCGGGAGGACTGCTGGAGCGAGGACGCCACCTTCACCCTCATCGACGCCTGGGGCGACCGCTACCTCGACCTCAACCGCGGCAACCTCCGCCAGAAGCACTGGCAGGAGGTCGCCGACGCCGTCAACAACGGCCACGCCGCCGGCAGCGCCAACAAGAAGGCCCGCCGGACCGACGTGCAGTGCAAAAACCGAATCGACACGCTCAAGAAGAAGTATAAGATCGAGAAGGCTAGGGTTTCCGAATCCGACGGCGGTTACCGGAGTCCCTGGCCGTTCTTCTCCCGACTCGACGACCTCATCGGAGACACTTTTCCNGCAAAAAAACTCTTGCCGCCGGCCGCCGCACGGACCTCCTCTGCCGCCGTGAAGCCGGNGCCGGCGCCGCTTCCGTGGATAGCCTCCCACCCGGTCGGTCCCCGATCCGGGACGCAGAAACGCCCAGCGCCGGCGACTAGGGATGACTCGTTGTTCCGGCGGAATTTCTCGGCGTTCGCGGCGGCTGCTGCGGCGGCGGCGGAGGCGGAGAGCGGGGAGTCGGAGGAGTGGAGGTCGAGCAGTGAGAAGAGGGGGAGGGGGAGGGAGAGTGAGAAGGAGTTGGAGTTCGGGTACAGAGAGCTTGCTCAGGCGATAGAGAGGTTCGGGGAGATGTATGAGAGAGTGGAAGCGTCGAAGCAGAGGCAAATGGTGGAGTTGGAGAAGCAGAGGATGCAGTTCGCGAAGGATTTGGAGTACCAGAGGATGCAGCTCTTCATGGAAACGCAGGTTCAGCTGCAGAAAATCAAGCGCACCAAGCGATCTTCTGGAACCAGGTCGATTCATTACATATTGATGAAAGATGGAATTCTGCATAACCTCACAATTATAGTNTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00387	161342	163390	+

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000387s00017719.1	PF13837.1	Myb_DNA-bind_4	28	125	3.40E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.550
SRR1783600	control	15.650
SRR1783602	moderate drought stress	23.438
SRR1811619	moderate drought stress	23.627

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.596
DRR006520	Root Summer glycyrrhizin high producing strain	11.835
DRR006521	Root Winter glycyrrhizin high producing strain	23.256
DRR006522	Root Winter glycyrrhizin high producing strain	22.382
DRR006523	Root Summer glycyrrhizin low producing strain	21.874
DRR006524	Root Summer glycyrrhizin low producing strain	22.711
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.401
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.132

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.872
SRR2868004	Drought Stress (root)	17.608
SRR2967015	Control (root)	20.916

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.122
SRR9715740	Leaf	18.422
SRR9715741	Leaf	17.476
SRR9715739	Root	15.788
SRR9715742	Root	19.128
SRR9715743	Root	17.155

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.785
SRR8749028	MeJA induced 9h	11.013
SRR8749029	MeJA induced 9h	15.601
SRR8749030	Uninduced	9.026
SRR8749031	Uninduced	6.324
SRR8749032	Uninduced	11.851

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.503
SRR8400027	Control - Root	13.478