Gene detail

Gene detail information of Glyur000387s00017709.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G58680.1	8.00E-67	multiprotein bridging factor 1B
NR	XP_007149730.1	6.10E-92	hypothetical protein PHAVU_005G094400g [Phaseolus vulgaris]
COG	YP_007249079.1	2.00E-06	TIGR00270 family protein [Methanoregula formicica SMSP]
Swissprot	tr\|Q9LXT3\|MBF1B_ARATH	8.00E-85	Multiprotein-bridging factor 1b
trEMBL	tr\|V7BUV4\|V7BUV4_PHAVU	2.00E-92	Uncharacterized protein {ECO:0000313\|EMBL:ESW21724.1}

Sequence

Transcript Sequence

>Glyur000387s00017709.1
TCCATATCAATATATCTCATATCTATTGTATCAGAAAAAAAAATCTCATGTTCACCAAAAAAAAAAAATTCTCATATCTATCATCTGTGCCACCCTCATTTTCCATTTCCAACTTCGTTTAGCTTCGCCAACAAAACAAAGAACCCTAGACACACACACACACACGGAAGAAAACCATAACCACAGAAACATGTCAGGTGTTGGCCCTCTTTCTCAGGACTGGGAACCCGTCGTCCTCCGCAAGAAAGCCCCCACCGCCGCCGCCAAAAAGGATGAGAAAGCCGTCAACGCCGCCCGCCGTGCCGGCGCCGACATCGATACCGTCAAAAAATATAATGCTGGGACAAACAAAGCTGCCGCTAGCACCACTTCATTGAACACTAAGAGGCTGGATGAGGATACAGAGAATCTAGCTCATGATCGTGTGCCAACTGAACTCAAGAAGGCTATAATGCAAGCTAGGATGGACAAGAAACTCACTCAGGCTCAGCTTGCTCAAATGATCAATGAGAAGCCTCAAGTGATCCAAGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAAAGAGCCCTTGGAGCTAAGCTGCGTGGCAAGAAATAAGGAACCTAATCTCATGGTTGTGCACTGAGTTTGCATGTCACTGTTGAAGTGTGCGTGTTTGTGTTGTCTTGCTAATTGTGTATATGTAAGACCGGATAAATGGTTCTGAGGACCCGTGTGTTCCAATAAATAAAGTTGCATTTTGGCTTAAACCTTCCTTTTACNAGCGATTGTAGGGTATGCTGGGTTGGATTGTCCATAGAGAAAGTGGTTGTTTGGGTGAATGTTTGCTATAAAATGTTTTTGAATGAACTTGGTTTTGTGAAATTGATTTTGTTAAAATTGAGTCTGAAGTGAAATGATTTGTTTGGATGTTTTCACCTTGAAAGAATGTTTGATGTAAAATTTAGTGCAAATGAATTTAAGNAAAATTTACTTTTTATCACTTCTAGTCAAATTGAAGGATGGAGACAAAATCAATTTTTTTCTAATCAAACATATCCTAAGTAAGATCATGCAGTTGAACCGTGGGTTCAAACTAGTCCCTCGACCAGGCAGTTGAACCTTGGGTCAGTCTGGGCTGGCGCTGCATCTACCTTCCACCATAGAAACAAGCTTGCTGATAATCAATCCCCACAAATGGGATCAAATGATTCAAATCATGTGGGAAATCACGCCTTTAATATTCTCCATGCCTTGATGACAAGACTTGGTTAAAGGGGAGAAAAAGCCTTGTCAAGGATATGTCAGAAATCTATTGGAGCACTAGAGCTAAGATCTGGGTAAAATTCCAGCGTGAGCAATATGAAAGAAAAAAAAAAAGAAGGAAAAAAAAACATTGTTATTAAGAAAGGGTATAACAAATAACACAAAAAAAGGATAATATTACATAGCATGGGAGCATTAATTATTATGTCCNTCTGTAGTCATCGGCTCATCGCCAGAGAGTTAATTAATCTTCGGGCACAGGGAGGTCCTCCTCATCGGGTGCATCCAAAACCCACTCTCCATCTTCCCTACGCACCATCCCTCTGTTCTTCTCCACCCACCACGACCCGGGCACGTGATACTCATCCTTCAAGAACTCACACGACTTGTTCACCAGAGCCAAGCTCCTCTTCACCTTCATCTCAAAGTCCCCACCAGCCCCATTCCACCCCGCCACCACATGCAGCATGGCCTGCAGGTTATGCCAATCACTCGGGTTCTTCGAGTCCTTCAGGCTCGGCGACTTCCTTGTATCAATCTCCAACTCCACCCCTGTATACTCATACCCCAACAACCTCCCCGGGTAATGCGTTATCACGTCTATCACATTCTTCACGTGCAAAACCTTCAGATTTGGGAACCTCTTTAGCCTCTCGTTGAATGCCTTGTTCCCAACTTGGGGTGACCCAAACACAATNGCGGCAACGGGAACGTCAGTACTCGCCCCATTCTCCACTAAATCGAATGCACTCACAATTGATAGGCTTGCCCCCAGACTNTGACCCACCAACACCACGCTTGGGCTCTCGTCCTTGTAAATGCGCAACAAATCTTTGACCTTGNTCAAAACCTGCGTTCTGGCACTTGTTTTGGTGAAGGGGGATTTTGGATCATCCGAGGTGTAGATTGTTAGCCAACCCTTCATTACTTTNGGTACTCTCTCATCATCCTCTTCGTCACTGCTGCTGCTACTCCCATCTGTATTACAAAATTAGTAAAGCCACATTTTTCTCCCCCTCAAAGGGAGGCCCGAACGCCAAAAGGAAGCCACATTTATTTCAGATTATATAAATATAAATATGTGATAATTAGAATTTAGAATGACATTGCAATGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00387	103179	107410	-

Gene family

Gene family	subfamily
Transcription Factors Family	MBF1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000387s00017709.1	PF08523.5	MBF1	9	79	3.20E-26
Glyur000387s00017709.1	PF01381.17	HTH_3	87	137	8.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.429
SRR1783600	control	38.394
SRR1783602	moderate drought stress	69.985
SRR1811619	moderate drought stress	69.566

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	59.263
DRR006520	Root Summer glycyrrhizin high producing strain	58.139
DRR006521	Root Winter glycyrrhizin high producing strain	32.224
DRR006522	Root Winter glycyrrhizin high producing strain	30.525
DRR006523	Root Summer glycyrrhizin low producing strain	74.978
DRR006524	Root Summer glycyrrhizin low producing strain	74.581
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.562
DRR006526	Leaf Summer glycyrrhizin high producing strain	44.606

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	59.054
SRR2868004	Drought Stress (root)	69.454
SRR2967015	Control (root)	77.565

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	77.504
SRR9715740	Leaf	78.985
SRR9715741	Leaf	74.057
SRR9715739	Root	76.132
SRR9715742	Root	64.813
SRR9715743	Root	60.842

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	63.765
SRR8749028	MeJA induced 9h	36.900
SRR8749029	MeJA induced 9h	88.903
SRR8749030	Uninduced	59.846
SRR8749031	Uninduced	92.914
SRR8749032	Uninduced	135.960

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	74.950
SRR8400027	Control - Root	77.617