Gene detail

Gene detail information of Glyur000387s00017696

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06410.1	0	trehalose-phosphatase/synthase 7
NR	XP_004505467.1	0	PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Cicer arietinum]
COG	YP_004625437.1	2.00E-130	alpha,alpha-trehalose-phosphate synthase [Thermodesulfatator indicus DSM 15286]
Swissprot	tr\|Q9LMI0\|TPS7_ARATH	0	Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
trEMBL	tr\|I1LSH8\|I1LSH8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G15500.1}

Sequence

Transcript Sequence

>Glyur000387s00017696.1
CAAAAAGAGAAAGAGAGAGACAATTAAATTAATTTGAAATATTTTCCGTTCACCTCAATTCTCATGAATTATGTACCAATTGATTAAATAATAATCAACATGTGAAATATTATATTAGTTCTGTNAATCTTCATTTTATATTTCAAGAGCGCTTTTCTAATTCGTAATTCATTTTCATTTTGTGTAAGAAGACGAAGAAGAATAAGGAGGAGGAGAAAGAGTAAGAGGCAGAGAAAGAGGGTAGATCTTGTAAATAAGGAAACCCTAGTTTTTCCTTTTTTGGGGTTATTTTGCAAATTTTCCCATTAATTCAGCTCCAACCTGCTACTGTTACCAATAAGAAATTTCTGGTCATTGCTTCAATCGCACAAGAGTGAACGAGTTTTGTGTATTTTTAGAAGAACGTAAAGATGATGTCGAGATCGTATACAAACCTTTTAGATTTGGCTTCCGGGAATTTCCCAGCAATGGGGAGGGAGTCTAAGGAACGAAGGCGGATGCCGAGGGTTATGAGTGTCCCCGGGTTTGTCACAGAGGTGGATGATGACCAGGCAGTTAGTGTTTCTTCTGATAATCCGTCAACTATTTCTACGGATAGAATGATCATCGTAGCAAACCAGCTACCTTTGAAAGCAAAGCGAAGAGAGGACAACAAAGGGTGGAGTTTTAGTTGGAATGAGGATTCCTTGCTTTTACANCTTAAGGATGGATTGCCAGATGAGATGGAGGTTCTTTATGTCGGGTCCTTGCGTGTTGACATTGATCCAGCAGAACAGGATGATGTGTCACAGTATTTATTGGAGAAATTCAAATGTGTCCCTACTTTTCTACCTCCTGATGTTTTGACAAAATTTTATGATGGCTTCTGCAAAAGGCAGTTATGGCCACTTTTTCATTACATGTTACCATTTTCGACGGATAAAAGCCACCGTTTTGATCGCACTTTGTGGGAAGCCTATGTGCTGGCAAATAAGCTTTTTTTCCAGAAGGTAGTAGAAATAATAAACCCAGAGGATGATTATATTTGGGTTCATGATTACCATTTGATGGTGCTGCCCACTTTTATAAGAAGGCGTTTTAACAGGGTTAAACTGGGATTTTTCTTGCATAGCCCCTTTCCATCATCAGAGATATATAGGACTCTTCCTGTCAGGGAAGAGATACTGAAAGCTTTACTGAACTCTGATATCATTGGATTCCATACCTTTGACTATGCTCGCCATTTCCTTTCCTGTTGCAGTCGGATGTTGGGTCTGGAGTATCAGTCAAAGAGGGGCTATCTAGGATTGGAATATTACGGAAGGACTATCAGTATCAAGATCATGCCTGTTGGGATTCACATGGGTCGGATTGAATCAGTTATGAGAATGGCGGATGAGGAGTGTAAGGTAAGGGAGCTCAAACAGCAATTCGAAGGAAAAACCATTTTGCTTGGTGTTGATGATATGGACATTTTCAAAGGCATAAATTTGAAGATTTTGGCCATGGAGCAGATGCTCAGACAACACCCCAAATGGCAGGGAAGAGCTGTTTTGGTCCAGATCGTTAATCCTGCTAGAGGTAAAGGGATACATCTAGAGGAGATTCATACTGAAATACAAGAAAGCTGCAGCAGGATAAACAGAGTGTTTGGACGGCCTGGTTATGAACCTATTGTTTTTATTGATAGATCGGTTCCAATTACCGAAAAAGTTGCCTATTACAGCATGGCTGAGTGTGTTATTGTCACGGCTGTAAGGGATGGGATGAACCTAACTCCTTATGAATATATTGTTTGTAGACAAGGAATTTCTGGCTCTGAATCATCTTCCAATGTGAATGACCCAAAGAAGAGTATGCTAGTAATATCAGAATTTATTGGNTGTTCTCCATCACTTAGTGGCGCTATCCGAGTCAATCCATGGAATGTTGAAGCAACTGCAGAGGCAATGAATGAGGCCATTTCAATGNGTGATGGAGAGAAACAGTTGCGGCATGAAAAGCATTATCGGTATGTCAGCACTCATGATGTGGCTTACTGGTCACGTAGCTTCTTGCAAGACATGGAGAGGGCTTGCACAGACCTTCTTAGGAAAAGATGCTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGACCCCAACTTTAAAAAGCTCTCAATTGATGCTATGGTTTCAGCTTACAAACGGGCAAGTAGTAGGGCCATTTTGTTGGACTATGATGGTACTGTGATGCCACAGAACTCCATTAATAAGAGTCCAAGCAAGGAGGTCATCTCTATTCTGGAAACTCTCTGTGCAGACTCCAAAAATGTAGTTTTCATTGTTAGTGGACGGGGGAGGAATAGCTTAAGTGAATGGTTTATTCCCTGCAAAAAACTTGGAATTGCTGCAGAACATGGATACTTCTTGAGGTGGTCCCACAGTGGAGAATGGGAAATTTGTGGTAAGTGCTCCGACTTTGGATGGATGCAGATTGCTGAACCTGTAATGAAACTATATACAGAGGCAACTGATGGTTCCAGCATTGAACGAAAGGAAAGTGCTTTGGTCTGGCAATACCGGGATGCAGACCTTGGTTTTGGATCNTCTCAGGCTAAGGAAATGTTAGATCATCTAGAAAGTGTTTTGGCCAATGAGCCTGTTGCTGCAAAGAGTGGCCAGTTTATTGTTGAAGTGAAGCCCCAGGATGTGAGCAAAGGCTTAGTTGCTGAAAAGATATTTTCATCAATGGCTGGGAAAGGCAAACCGGCTGACTTTGTGCTATGTGTTGGTGATGACAGATCAGATGAGGACATGTTTGAAATAGTGAGTAGTGCAATCTCAAGAAACATTCTTTCCCCAAATGCTTCTGTATTTGCCTGCACGGTTGGACAAAAGCCAAGCAAAGCCAAGTATTATCTGGATGATACGTCTGAAGTAATAAGCATGCTAGAATCTTTGGCNGAAGAATCAGAATGTTCACCCCGCATAGAAGAATCTGGGGATTCCTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00387	52426	57404	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT20

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K16055	TPS	EC:2.4.1.15 3.1.3.12	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005992 trehalose biosynthetic process

GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000387s00017696.1	PF00982.16	Glyco_transf_20	63	546	2.20E-178
Glyur000387s00017696.1	PF02358.11	Trehalose_PPase	596	831	4.50E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.903
SRR1783600	control	13.073
SRR1783602	moderate drought stress	10.536
SRR1811619	moderate drought stress	10.470

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.158
DRR006520	Root Summer glycyrrhizin high producing strain	21.556
DRR006521	Root Winter glycyrrhizin high producing strain	12.228
DRR006522	Root Winter glycyrrhizin high producing strain	11.977
DRR006523	Root Summer glycyrrhizin low producing strain	26.449
DRR006524	Root Summer glycyrrhizin low producing strain	25.727
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.685
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.257

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.822
SRR2868004	Drought Stress (root)	64.951
SRR2967015	Control (root)	62.175

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	121.766
SRR9715740	Leaf	67.427
SRR9715741	Leaf	163.424
SRR9715739	Root	12.966
SRR9715742	Root	82.349
SRR9715743	Root	72.702

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.471
SRR8749028	MeJA induced 9h	54.974
SRR8749029	MeJA induced 9h	51.058
SRR8749030	Uninduced	58.174
SRR8749031	Uninduced	108.768
SRR8749032	Uninduced	77.356

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.893
SRR8400027	Control - Root	32.544