Gene detail

Gene detail information of Glyur000387s00017694

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43810.2	1.00E-41	Small nuclear ribonucleoprotein family protein
NR	AFK41314.1	3.59E-59	unknown [Lotus japonicus]
COG	YP_003895837.1	3.00E-12	small nuclear riboprotein-like protein [Methanoplanus petrolearius DSM 11571]
Swissprot	tr\|O22823\|LSM6B_ARATH	2.00E-53	Sm-like protein LSM36B {ECO:0000305}
trEMBL	tr\|I3SM22\|I3SM22_LOTJA	1.00E-59	Uncharacterized protein {ECO:0000313\|EMBL:AFK41314.1}

Sequence

Transcript Sequence

>Glyur000387s00017694.1
TGGGACCTAAGTGCCAAACCCACCAGTAACCCTAGCGATTCCCTCTCGATTGTTGATACGCTCCCACTGTTGCCACCACTCTTCACCGCTTCCCTTTCGCCGCACTTCACTCCCTCTGTCTACCATCTTCAAGCCCTTGTTAGGCTGCAAGAGACCAAGTACACCCACCCTCTCTCTCGCCGAAATTGAAGGTGTTTGNGGGGTTGACATCGAAAACTAAAAAATAGAAAAAGATGAGTGGAGCAGAGAAAGGGTCAGGAACCACAAAAACTCCTGCAGATTTCCTCAAATCGATTCGTGGTAGGCCAGTTGTTGTGAAGCTGAACTCTGGTGTTGATTATCGAGGGATCCTAGCCTGTCTAGATGGCTATATGAACATTGCAATGGAACAGACAGAGGAGTATGTTAACGGACAACTGAAGAACAAGTATGGTGATGCATTCATTCGAGGGAATAATGTTCTATACATCAGTACCTCAAAGAGGACTCTAGCTGAAGGGGCTTAGGAAGTCCAGGAGTCCAAAAATTATGTGGACTGTCTGCACGTAGCAGCTTTTGCCTATTTTTCTGAAGCTTGTTTACTTCGTGTTTGTTATTGTAATTGAGTTGCTGTGGTTATCTATTAAGGCAAAACCACATGGCAAGTTTGTAAAATACTTTTTGGCATATCTTGGCAGAATATTTCAGCTTAGTTTGGAACTTTTAAATAGTNATAGTAAATGCTATCACTTTAGTGTAGTTTTTTTTTTGTTTTTTTCAATGTTTTCAATGCTATGTTATACATTATGTTGCATAAATCGTTTTTTGGGTGTCATTGTCTTCGCGAGGGGGACTTGGTATGCATAATTAGTTAGATAGTTGTGCCTTAAGTTAGCACATACACTAGTCCTTATATGTTGTTGCCTTACTTTAGTTGAAGAATTAGATTAGATTAGATAGTTTTTGACTCAGATTTGGAGAGGTGTGACAGCCCAGCTAAAATCGTATCATATCATCCACAGTGGAGTCATAATTATTAGACACGCAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00387	40416	42764	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000387s00017694.2	PF01423.17	LSM	17	80	1.00E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.627
SRR1783600	control	9.009
SRR1783602	moderate drought stress	8.362
SRR1811619	moderate drought stress	8.300

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.194
DRR006520	Root Summer glycyrrhizin high producing strain	28.243
DRR006521	Root Winter glycyrrhizin high producing strain	22.703
DRR006522	Root Winter glycyrrhizin high producing strain	21.461
DRR006523	Root Summer glycyrrhizin low producing strain	19.236
DRR006524	Root Summer glycyrrhizin low producing strain	19.428
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.525
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.919

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	59.722
SRR2868004	Drought Stress (root)	52.875
SRR2967015	Control (root)	52.719

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.855
SRR9715740	Leaf	38.248
SRR9715741	Leaf	36.972
SRR9715739	Root	27.970
SRR9715742	Root	29.804
SRR9715743	Root	27.914

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.866
SRR8749028	MeJA induced 9h	18.521
SRR8749029	MeJA induced 9h	26.988
SRR8749030	Uninduced	6.212
SRR8749031	Uninduced	3.262
SRR8749032	Uninduced	5.270

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.848
SRR8400027	Control - Root	41.379