Gene detail

Gene detail information of Glyur000387s00017690

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42750.1	5.00E-115	DNAJ heat shock N-terminal domain-containing protein
NR	AFK46755.1	0	unknown [Lotus japonicus]
COG	YP_007107948.1	2.00E-24	hypothetical protein GEI7407_0395 [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q8GYX8\|DNJ10_ARATH	8.00E-13	Chaperone protein dnaJ 10
trEMBL	tr\|I3T2L3\|I3T2L3_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK46755.1}

Sequence

Transcript Sequence

>Glyur000387s00017690.1
GTCTTTGGTTGTCACACTGCCACTTCAGCACTACCCCCTTGATACTTCTCTGCCTCGAAATTTCTTCCTCCTCAAAAAATTTTAATTACACAAGATTTTTCCATTTTCATAATAATATCAACCTCTTTTNAAAAAAAATGTTTTTTATGCTATTTTATTTTCTCTGTTCAACACTTCAAACTTCACCATTCCAAGCTTCTTTTGAGTGGCAATTGGTCTTTTTGAATGGCTCAGTTACTGTCTCCAGTATACACAGAAGCTCTCAAAGTCCACAACCCATCACTGAGTTTGTGTTCCAGAAGCTTATGGCGGATGCTGCCAAAGAGTACTGCAACTCCTTTGAACTTTGTAACACACAATGGCAAACGAAGAGGCTGTGGGGGCAGGGTAAGAGCTGCTGCTGCGGATTCATCTTCAATGAGTGACACTGTTGCAGATGACTATTATGCAGTTTTGGGCCTGCTTCCAGATGCCACATCAGCACAGGTCAAGAAGGCCTACTACGATTGCATGAAAGCTTGCCATCCGGATTTGAGTGGCAATGATCCTGAGACCACAAATTTCTGCATGTTCATCAATGAAGTCTATGCGGTGCTCAGTGATCCAGTTCAGCGCATGGTTTACGATGAAATTCATGGGTATTCTTTGACNTCAATCAATCCTTTCCTGGATGATTCTAGCACAAAGGATCATGTTTTTGTTGATGAATTCAGCTGCATAGGCTGCAAAAATTGTGCCAATGTTGCCTGTGATGTGTTTGCAATAGAGGAAGACTTTGGAAGAGCCAGAGTATCCAACCAATGCGGGAACCCTGAATTAATTCAACAGGCTATTGATAGTTGCCCTGTTGACTGCATTCATTGGACATCAGCTGCACAACTGTCATTACTTGAAGACGAAATGCGTCGCGTAGAAAGAGTCAATGTTGCTCTAATGCTTTCAGGAATGGGATCAGCATCAAGTGATGTTTTCAGAATGGCAAGCTCCCGGTGGCAAAAGAGGCAGGCAAAAGTCTTGGAACAAGCAAAATTGAGAATGATGAAGCAGAAAGGTTCTGATAACACAGACTCATACTGGGACAATCTTTGGGGCAAACCAAGAGACTACCAACGTTCAGTGGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00387	30149	34707	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0051536 iron-sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000387s00017690.1	PF00226.26	DnaJ	72	134	1.00E-17
Glyur000387s00017690.1	PF13459.1	Fer4_15	157	213	3.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.222
SRR1783600	control	0.284
SRR1783602	moderate drought stress	0.694
SRR1811619	moderate drought stress	0.734

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.501
DRR006520	Root Summer glycyrrhizin high producing strain	0.762
DRR006521	Root Winter glycyrrhizin high producing strain	0.359
DRR006522	Root Winter glycyrrhizin high producing strain	0.289
DRR006523	Root Summer glycyrrhizin low producing strain	1.526
DRR006524	Root Summer glycyrrhizin low producing strain	1.527
DRR006525	Leaf Summer glycyrrhizin high producing strain	233.019
DRR006526	Leaf Summer glycyrrhizin high producing strain	228.838

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.030
SRR2868004	Drought Stress (root)	4.093
SRR2967015	Control (root)	3.530

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	95.690
SRR9715740	Leaf	150.191
SRR9715741	Leaf	107.625
SRR9715739	Root	0.064
SRR9715742	Root	0.298
SRR9715743	Root	0.321

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.116
SRR8749028	MeJA induced 9h	0.754
SRR8749029	MeJA induced 9h	0.195
SRR8749030	Uninduced	0.425
SRR8749031	Uninduced	0.541
SRR8749032	Uninduced	0.302

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.709
SRR8400027	Control - Root	1.404