Gene detail information of Glyur000387s00017686 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42740.1 | 8.00E-89 | ribosomal protein large subunit 16A |
| NR | NP_001237077.1 | 8.06E-129 | uncharacterized protein LOC100499863 [Glycine max] |
| COG | YP_003435583.1 | 1.00E-51 | 50S ribosomal protein L5 [Ferroglobus placidus DSM 10642] |
| Swissprot | tr|P46287|RL11_MEDSA | 3.00E-130 | 60S ribosomal protein L11 |
| trEMBL | tr|C6SXI7|C6SXI7_SOYBN | 3.00E-129 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G12320.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00387 | 20974 | 22891 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000387s00017686.1 | PF00281.14 | Ribosomal_L5 | 9 | 62 | 2.50E-21 |
| Glyur000387s00017686.1 | PF00673.16 | Ribosomal_L5_C | 66 | 165 | 6.00E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 34.217 |
| SRR1783600 | control | 34.604 |
| SRR1783602 | moderate drought stress | 43.763 |
| SRR1811619 | moderate drought stress | 43.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 113.071 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 112.623 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 62.213 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 60.892 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 107.119 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 107.050 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.874 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 132.599 |
| SRR2868004 | Drought Stress (root) | 85.663 |
| SRR2967015 | Control (root) | 79.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.614 |
| SRR9715740 | Leaf | 34.813 |
| SRR9715741 | Leaf | 30.750 |
| SRR9715739 | Root | 70.507 |
| SRR9715742 | Root | 48.994 |
| SRR9715743 | Root | 53.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 80.796 |
| SRR8749028 | MeJA induced 9h | 24.643 |
| SRR8749029 | MeJA induced 9h | 45.204 |
| SRR8749030 | Uninduced | 17.587 |
| SRR8749031 | Uninduced | 9.847 |
| SRR8749032 | Uninduced | 23.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 83.507 |
| SRR8400027 | Control - Root | 75.212 |