Gene detail

Gene detail information of Glyur000387s00017684

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	2.00E-77	disease resistance protein (TIR-NBS-LRR class), putative
NR	KEH30741.1	0	disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
COG	YP_006806619.1	8.00E-07	transcriptional regulator, SARP family protein [Nocardia brasiliensis ATCC 700358]
Swissprot	tr\|Q40392\|TMVRN_NICGU	1.00E-73	TMV resistance protein N
trEMBL	tr\|A0A072UMY5\|A0A072UMY5_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:KEH30741.1}

Sequence

Transcript Sequence

>Glyur000387s00017684.1
ATGGCTTGCAATAGCATCCAAAGGAGCTCTTCACCTTGGATGAAATGGAAATATGATGTGTTTGTGAGCTTTAGAGGGGAAGACACGCGCGCCAATTTCACCGATCACCTTTTCGGTGCTCTCCATAGCAAAGGCATCCTTACCTTCAAGGATGACACAAAGCTCAAGAAAGGAGAATATATATCATCTCAGCTTCTACAAGCAATTGAAGGATCCAAGATTTTGATTGTTGTCTTCTCAAGAAACTATGCTTCCTCCACATGGTGCTTGCGAGAACTGGCAAAAATTGCTGAGTGCATTGAAGTACCAGGACAAAATGTTCTGCCTATATTCTATGATGTGAATCCATCCGAGGTTAGAAAGCAGAGTGGGAATTATGGAAAAGCCTTTGTGGAGCATGAAAAAAGGTTCAGAGAAAATTTAGAGGAAGTGCAGAGATGGAGAGGAGCACTAGCACAAGTAGCCAATCGTTCTGGTTGGGATGTGAGGGATAAGGCACAATATGCAGAGATTGGAAAAATTGTTAAAGAGCTTCTGGTTTTGGACTCAGATGATGATGTTCGAATTGTAGGGATTTGTGGAATGGGTGGTATTGGAAAGACAACTCTTGCTACTGTTTTGTATGATAAGATCTCTCATCAATTTGATGCATCCTGCTATATTGATGATGTGAGTCAAATTTATGGAGGCTATGGTCCAATTGGGGTGCAAAAGCAACTTCTTTGTCAAATTCGAAATGAAGAAAGTCTTCAGATATGCAATTTTTCTATGGCATCTAAATTGATACAAACTAGGCTATGTCAAACAAAGGCCCTTATAGTTCTTGATAATGTTGATCAAGTTGAACAACTGGATAAATTGGCCATCAAACGAGAATGGCTTGGTGTAGGGAGTAGAATCATCATAATTTCTACAGACAGGCATATCTTGAGAGAGCATGGAGTAGATGAAGTTTACAAAGTTCAGCTCTTGGATTATAACAATGCTCTTCATTTGTTTTGCAGGAAAGCCTTCAAATCAATTGAAGTATTGGGCTCATTTCTGTATGGTCGAAATGTGTCTGAATGGAGAAGTGCATTGACAAGATTAAGAGAGAATCCAAGGAAAGATATTATGGATAGTATTGTTCGGGAAAAATCACCAAAAGAACCAGGAAAGTGGAGCAGGTTGTGGGCCTACAAGGATGTCCACGATGTTATCGCAAAAAATATGGCAACAGGAAACCTTGAAGCCATAGTTCTGCAGCAATATTCTGAAAATATTGAAGAACAACGGGAGATGAGGGATAAACTTGTTGAATTGATCCTACCTCATAGCAACATCAGGCAACTATGGGAAGCCACAAAGCACTGTAAGCAGCTGAAATATTTGCCTGAGCTCCCATCAAGTACTGTCTTGCCAGTACGAACAACAAGTGCTGGATTATATATTTTCAACTGCCCCAATTTAAGTGAGATGGAATGCTGTTATGGAATAGCTTTTTCTTGGATGATACAACTCCTTGAGGTGCTCATGCAGTCCTATGACCCATGGGGTCACATTGATATTGTTATTCCCGGAACTCAAATTCCAATGTGGTTCAACAAACAAACTGTGGGTAGTTCAATAAGCATGGATCCATCACCCATTATGCATGACAAAAATTGGATTGGTGTTGCTTGCTGCTTAACATTTGTGGCACATGATGATCCAACTAATTTAGGTGAAAGATGGCGACCTCATTTTGGGCTCGGTTTTAGAAAACCAAATCATGGAAGTTTTCAAATTGTTCCCATACATCTCAGAAAAGATTTGGTCACGGTTGAATTAGATCATCTGGTGCTACTTTTTTTCACTAGAAAAATATTCATTGATGGTTATGTGAGCGATCTAATAAAGGGAGTGCATGATATCGATGGCATCGAATTGGCAACCACAGTTGAGCTTGAGCAGCCCCAAGGCTTGCATTTGGAGGTCAAAAGGATCGGGTATCGTTGGGTATTTAAGGAGGATATGGAACAACTAAACCCAAAAATGATAGCTGTAGAGTCTGATAATACACCCGTGATTAACTACCTTTCTTGCAGAATGATCATAGAAATAACCTTGTTTGATGAAGCCAAGATAAAACAAGGGTGTTACACTGCTGAAGAAGAGGAAGAGTGCGATAGACAGGATCATGGTCCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00387	2999	7622	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000387s00017684.1	PF01582.15	TIR	20	152	2.20E-35
Glyur000387s00017684.1	PF00931.17	NB-ARC	170	340	1.60E-24
Glyur000387s00017684.1	PF07725.7	LRR_3	430	449	4.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.177
SRR1783600	control	3.698
SRR1783602	moderate drought stress	3.880
SRR1811619	moderate drought stress	3.880

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.657
DRR006520	Root Summer glycyrrhizin high producing strain	4.282
DRR006521	Root Winter glycyrrhizin high producing strain	3.305
DRR006522	Root Winter glycyrrhizin high producing strain	2.837
DRR006523	Root Summer glycyrrhizin low producing strain	3.226
DRR006524	Root Summer glycyrrhizin low producing strain	2.895
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.908
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.796

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.138
SRR2868004	Drought Stress (root)	9.955
SRR2967015	Control (root)	6.389

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.663
SRR9715740	Leaf	4.285
SRR9715741	Leaf	7.741
SRR9715739	Root	0.322
SRR9715742	Root	2.207
SRR9715743	Root	1.722

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.011
SRR8749028	MeJA induced 9h	2.448
SRR8749029	MeJA induced 9h	0.681
SRR8749030	Uninduced	2.059
SRR8749031	Uninduced	2.601
SRR8749032	Uninduced	1.392

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.592
SRR8400027	Control - Root	2.517