Gene detail

Gene detail information of Glyur000386s00015340.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71380.1	0	cellulase 3
NR	KHN24805.1	0	Endoglucanase 9 [Glycine soja]
COG	YP_290232.1	7.00E-79	endoglucanase [Thermobifida fusca YX]
Swissprot	tr\|Q9C9H5\|GUN9_ARATH	0	Endoglucanase 9 (Precursor)
trEMBL	tr\|V7BRQ0\|V7BRQ0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW20634.1}

Sequence

Transcript Sequence

>Glyur000386s00015340.1
CATAAACATAAACAAATTCCAAAGCAAAAAACACACTTTGGTGCTTTTCTCTAACAATGACAACTTGTTCCTTGCCTTTCNTGTTCCTTCTCACATTCTTGCTAGTGGTGGGAAGTGTCCAATGCAGTCCAAACTACAGAGAAGCTTTGGCTAAGTCATTGCTGTTTTTCCAAGGGCAGAGGTCTGGAAGGCTTCCCCCTAACCAGCAACTCAAATGGAGATCCAGTTCTGGCCTTTCTGATGGTCGCCTAGCCAATGTGGATTTAAGTGGAGGCTACTATGATGCTGGAGACAATGTGAAGTTCAATTTTCCAATGGCCTTCACAACCACCATGCTATCATGGAGCACAATTGAATATGGCAAGAGAATGGGGCCACAGCTCCAAGAAGCAAGAGCTGCAATCAGATGGGGCAGTGACTACCTCCTCAAGTGTGCCACATCCACACCTGGTAGGCTCTATGTTGGTGTTGGAGACCCAAATGTTGATCACAAGTGTTGGGAAAGGCCAGANGACATGGACACTGCTAGGACTGTGTATTGGGTATCTCCAAACAACCCTGGTTCAGATGTGGCNGCTGAAACTGCTGCTGCACTTGCTGCTGCATCTCTTGTTTTCAAAAAGGTTGATCCAACATACTCTAANATGTTGTTAAGGGCTGCCCAAAAGGTTTACCAATTTGCTTTGAAGTATCAAGGNTCCTACAGTGATTCACTTGGATCTGCAGTTTGCCCATTTTATTGCTCATATTCTGGATTCAAGGATGAACTACTGTGGGGAGCTGCATGGCTTTTCAGAGCAACAAATGCTGTTTACTACTACAATTTGGTGAAGTCCTTGGGAGCTGATGATCAACCTGATGTATTCAGCTGGGACAACAAATATGCTGGTGCACATGTCCTTCTCTCAAGGAGAGCATTGCTGAGTGGTGATAAGAACTTTGATCAATACAAGCAAGAAGCTGAGAATTTCATGTGCAAGATCTTGCCCAACTCACCATCTTCAAGCACACAATATACACAAGGAGGACTCATGTTCAAGATGCCTCAAAGCAATCTCCAGTATGTGACATCTATAACATTCTTGCTCACAACCTATTCCAAGTACATGTCAGCTACAAAGCACACATTTAACTGTGGCAACGTAGACTACATATTAGGAGAAAACCCACTTAAAATGTCCTACATGGTAGGTTATGGTCCATACTTTCCCAAGAGAATTCACCACAGAGGATCTTCCTTGCCTTCACTATNAACTCATCCACAAAGCATAGGCTGTGATGGAGGTTTCCAATCATTTTTCTATTCACTGAATCCTAATCCTAACATATTGGTTGGAGCCATAGTTGGAGGTCCCAACCAAAACGACGGATTTCCAGATGACCGCGGTGATTACAGCCATTCAGAACCTGCAACTTACATCAATGGTGCTGCTGTTGGACCTTTAGCATACTTTGCCGGTACCGGTTAATGTTAGATTGACTTTGACAGAAAAGGTCAAAACAGGGCCTAGTCATGTCATCAAGTGTAGATATAGTATCATCTCTACCCAACAAAGGGATGTCTACCAACCCAAAAAACAGTNGGTGGACTATGGAGTTAGCAGTGTTGATTTCCAGTCTTTTGATACAAAATTACAACTTCAAGTAATCACAATCCAACATATTTACTATGTTTTACACTACATGNTGTATCATAGCACCCAAAAAACATATGTTACCACCCTCAACCATCCCTATACTCTTTCTTTTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00386	137962	141857	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH9

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01179	E3.2.1.4	EC:3.2.1.4	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000386s00015340.1	PF00759.14	Glyco_hydro_9	26	464	3.50E-159

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.045
SRR1783600	control	46.519
SRR1783602	moderate drought stress	20.770
SRR1811619	moderate drought stress	20.512

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	63.710
DRR006520	Root Summer glycyrrhizin high producing strain	62.773
DRR006521	Root Winter glycyrrhizin high producing strain	0.127
DRR006522	Root Winter glycyrrhizin high producing strain	0.243
DRR006523	Root Summer glycyrrhizin low producing strain	32.955
DRR006524	Root Summer glycyrrhizin low producing strain	33.001
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.038
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.195

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	86.091
SRR2868004	Drought Stress (root)	80.860
SRR2967015	Control (root)	92.649

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.475
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.254
SRR9715739	Root	11.007
SRR9715742	Root	6.102
SRR9715743	Root	5.310

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	974.110
SRR8749028	MeJA induced 9h	401.222
SRR8749029	MeJA induced 9h	421.158
SRR8749030	Uninduced	0.292
SRR8749031	Uninduced	1.277
SRR8749032	Uninduced	5.219

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	97.775
SRR8400027	Control - Root	84.399