Gene detail information of Glyur000386s00015331.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25710.2 | 1.00E-123 | holocarboxylase synthase 1 |
| NR | XP_003601098.1 | 0 | Holocarboxylase synthetase hcs2 [Medicago truncatula] |
| COG | YP_461988.1 | 3.00E-20 | biotin operon repressor / biotin--[acetyl-CoA-carboxylase] synthetase [Syntrophus aciditrophicus SB] |
| Swissprot | tr|Q9SL92|HCS1_ARATH | 2.00E-157 | Biotin--[acetyl-CoA-carboxylase] ligase (Precursor) |
| trEMBL | tr|G7J3L5|G7J3L5_MEDTR | 0 | Biotin holocarboxylase synthetase, putative {ECO:0000313|EMBL:AES71349.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00386 | 83628 | 89517 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01942 | HLCS | EC:6.3.4.9 6.3.4.10 6.3.4.11 6.3.4.15 | Biotin metabolism | map00780 |
| Biotin metabolism | map00780 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000386s00015331.2 | PF03099.14 | BPL_LplA_LipB | 162 | 268 | 4.10E-22 |
| Glyur000386s00015331.2 | PF02237.12 | BPL_C | 350 | 398 | 3.50E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.712 |
| SRR1783600 | control | 9.882 |
| SRR1783602 | moderate drought stress | 16.397 |
| SRR1811619 | moderate drought stress | 16.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.607 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.549 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.438 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.633 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.761 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.813 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.546 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.156 |
| SRR2868004 | Drought Stress (root) | 42.999 |
| SRR2967015 | Control (root) | 41.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.629 |
| SRR9715740 | Leaf | 14.932 |
| SRR9715741 | Leaf | 13.087 |
| SRR9715739 | Root | 4.672 |
| SRR9715742 | Root | 8.863 |
| SRR9715743 | Root | 8.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.941 |
| SRR8749028 | MeJA induced 9h | 27.388 |
| SRR8749029 | MeJA induced 9h | 20.722 |
| SRR8749030 | Uninduced | 19.695 |
| SRR8749031 | Uninduced | 21.561 |
| SRR8749032 | Uninduced | 16.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.016 |
| SRR8400027 | Control - Root | 19.556 |