Gene detail information of Glyur000386s00015329 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71340.1 | 1.00E-77 | PLC-like phosphodiesterases superfamily protein |
| NR | KEH32794.1 | 8.59E-152 | glycerophosphodiester phosphodiesterase family protein [Medicago truncatula] |
| COG | YP_002775216.1 | 8.00E-08 | glycerophosphoryl diester phosphodiesterase [Brevibacillus brevis NBRC 100599] |
| Swissprot | tr|F4I8H8|GDPD4_ARATH | 2.00E-100 | Glycerophosphodiester phosphodiesterase GDPD4 {ECO:0000305} |
| trEMBL | tr|A0A072USJ9|A0A072USJ9_MEDTR | 3.00E-152 | Glycerophosphodiester phosphodiesterase family protein {ECO:0000313|EMBL:KEH32794.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00386 | 75852 | 81338 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.422 |
| SRR1783600 | control | 31.161 |
| SRR1783602 | moderate drought stress | 38.826 |
| SRR1811619 | moderate drought stress | 37.534 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.220 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.123 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 36.494 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.992 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.802 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.906 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.418 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.252 |
| SRR2868004 | Drought Stress (root) | 17.883 |
| SRR2967015 | Control (root) | 20.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.495 |
| SRR9715740 | Leaf | 10.480 |
| SRR9715741 | Leaf | 10.294 |
| SRR9715739 | Root | 4.917 |
| SRR9715742 | Root | 9.004 |
| SRR9715743 | Root | 8.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.967 |
| SRR8749028 | MeJA induced 9h | 21.853 |
| SRR8749029 | MeJA induced 9h | 19.548 |
| SRR8749030 | Uninduced | 13.330 |
| SRR8749031 | Uninduced | 10.321 |
| SRR8749032 | Uninduced | 9.597 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.941 |
| SRR8400027 | Control - Root | 23.214 |