Gene detail

Gene detail information of Glyur000386s00015326

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72190.1	3.00E-109	D-isomer specific 2-hydroxyacid dehydrogenase family protein
NR	XP_003598073.1	7.24E-164	D-3-phosphoglycerate dehydrogenase [Medicago truncatula]
COG	YP_002605985.1	7.00E-54	SerA2 [Desulfobacterium autotrophicum HRM2]
Swissprot	tr\|O04130\|SERA2_ARATH	6.00E-31	D-3-phosphoglycerate dehydrogenase 2, chloroplastic (Precursor)
trEMBL	tr\|G7J081\|G7J081_MEDTR	3.00E-164	D-isomer specific 2-hydroxyacid dehydrogenase domain protein {ECO:0000313\|EMBL:AES68324.1}

Sequence

Transcript Sequence

>Glyur000386s00015326.1
ATTCAGATGCAGCTTATAATGCAGTATGGTGTTGGGCTGGAAGGTGTTGATATTGATGCTGCAACAAAGCATGGAATCAAAGTTGCTAGGATCCCTAGTGGTGTTACAGGAAATTCAGCTTCATGTGCTGAAATGGCCATATATCTAATGTTGGGTCTCCTCCGTAAGCAAAATGAACTGCAGATTTCCATACAGCAGAAGAAGCTTGGAGAGCCAATTACTGATACTTTACTTGGGAAAACTATATTCATTATGGGCTTTGGGAACATTGGAATTGATTTAGCACAGCGATTGCAACCATTTGGTGTAAAAGTTATCGCTACAAAGCGGAGCTGGGATTCATATGCACAAGGCACTAACAAATTAAGAACAAATGGTGTTGATGAGCTTGTTGATGAGAAGGGTAGTCACGATGATATATACGACTTTGCGAGGAAAGCTGACATTGTTGTTTGCTGCTTATGCTTAAATAGTAAAACGGCTGGTATTATAAACAGTAACTTCATATCTTCTATGAAAAAGGGTGCCTTTCTGGTGAATGTTGCCAGAGGTGGTCTTGTGGACTATGAGGCTGTGGTCAAACACCTTGAATCCGGCCATTTAGGAGGGTTAGGCACTGATGTTGCATGGACTGAGCCATTTGATCCTGCTGATCACATATTTAAATTTAAGAATGTTATCATGACTCCTCATGTTGCAGGCGTTACAGAACATTCTTATAGATCCATGGCTAAGGTTGTTGGTGATGTTGTTCTTCAACTTCATGCCGGGCTTCCTTTGACAGGGATAGAGTTGGCTGGTATTATAAACAGTAACTTCATATCTTCTATGAAAAAGGGTGCCTTTCTGGTGAATGTTGCTAGAGGTGGTCTTGTAGACTATGAGGCTGTGGTCAAACACCTTGAATCCGGCCATTTAGGAGGGTTAGGCACTGATGTTGCATGGACTGAGCCATTTGATCCTGCTGATCAGATATTTAAATTTAAGAATGTTGTTGGTGATGTCGTTCTTCAACTTCATGCCGGGCTTCCTTTGGCAGGGATTGAATTGGTTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00386	54805	70541	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000386s00015326.1	PF00389.25	2-Hacid_dh	2	255	4.10E-09
Glyur000386s00015326.1	PF02826.14	2-Hacid_dh_C	45	231	4.70E-46
Glyur000386s00015326.1	PF02826.14	2-Hacid_dh_C	263	330	4.70E-20
Glyur000386s00015326.5	PF00389.25	2-Hacid_dh	2	104	1.20E-07
Glyur000386s00015326.5	PF02826.14	2-Hacid_dh_C	45	225	7.00E-42
Glyur000386s00015326.6	PF00389.25	2-Hacid_dh	2	104	1.20E-07
Glyur000386s00015326.6	PF02826.14	2-Hacid_dh_C	45	225	7.00E-42
Glyur000386s00015326.7	PF02826.14	2-Hacid_dh_C	89	154	2.10E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.235
SRR1783600	control	5.410
SRR1783602	moderate drought stress	3.857
SRR1811619	moderate drought stress	4.223

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.589
DRR006520	Root Summer glycyrrhizin high producing strain	7.939
DRR006521	Root Winter glycyrrhizin high producing strain	3.366
DRR006522	Root Winter glycyrrhizin high producing strain	3.534
DRR006523	Root Summer glycyrrhizin low producing strain	6.778
DRR006524	Root Summer glycyrrhizin low producing strain	8.081
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.890
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.937

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.963
SRR2868004	Drought Stress (root)	6.117
SRR2967015	Control (root)	5.147

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.204
SRR9715740	Leaf	1.140
SRR9715741	Leaf	2.297
SRR9715739	Root	1.531
SRR9715742	Root	3.012
SRR9715743	Root	2.815

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.021
SRR8749028	MeJA induced 9h	15.713
SRR8749029	MeJA induced 9h	14.029
SRR8749030	Uninduced	6.420
SRR8749031	Uninduced	4.820
SRR8749032	Uninduced	3.960

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.945
SRR8400027	Control - Root	11.193