Gene detail information of Glyur000385s00019809 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33170.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004501417.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9SMZ2|PP347_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g33170 |
| trEMBL | tr|G7J944|G7J944_MEDTR | 0 | Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:AES73485.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00385 | 148081 | 151059 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000385s00019809.1 | PF13812.1 | PPR_3 | 68 | 88 | 0.79 |
| Glyur000385s00019809.1 | PF01535.15 | PPR | 179 | 203 | 0.9 |
| Glyur000385s00019809.1 | PF13041.1 | PPR_2 | 204 | 251 | 6.90E-09 |
| Glyur000385s00019809.1 | PF01535.15 | PPR | 282 | 310 | 0.89 |
| Glyur000385s00019809.1 | PF01535.15 | PPR | 354 | 377 | 0.1 |
| Glyur000385s00019809.1 | PF01535.15 | PPR | 382 | 412 | 0.0011 |
| Glyur000385s00019809.1 | PF01535.15 | PPR | 456 | 475 | 0.0043 |
| Glyur000385s00019809.1 | PF01535.15 | PPR | 486 | 514 | 0.0006 |
| Glyur000385s00019809.1 | PF13041.1 | PPR_2 | 583 | 630 | 3.30E-08 |
| Glyur000385s00019809.1 | PF01535.15 | PPR | 658 | 684 | 0.00027 |
| Glyur000385s00019809.1 | PF13041.1 | PPR_2 | 686 | 732 | 1.50E-10 |
| Glyur000385s00019809.1 | PF13812.1 | PPR_3 | 758 | 783 | 0.0058 |
| Glyur000385s00019809.1 | PF14432.1 | DYW_deaminase | 860 | 981 | 1.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.496 |
| SRR1783600 | control | 1.573 |
| SRR1783602 | moderate drought stress | 2.600 |
| SRR1811619 | moderate drought stress | 2.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.389 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.363 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.525 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.457 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.003 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.913 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.279 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.153 |
| SRR2868004 | Drought Stress (root) | 2.995 |
| SRR2967015 | Control (root) | 3.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.058 |
| SRR9715740 | Leaf | 1.539 |
| SRR9715741 | Leaf | 1.226 |
| SRR9715739 | Root | 1.079 |
| SRR9715742 | Root | 2.797 |
| SRR9715743 | Root | 2.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.499 |
| SRR8749028 | MeJA induced 9h | 6.364 |
| SRR8749029 | MeJA induced 9h | 4.973 |
| SRR8749030 | Uninduced | 2.649 |
| SRR8749031 | Uninduced | 3.601 |
| SRR8749032 | Uninduced | 1.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.505 |
| SRR8400027 | Control - Root | 2.850 |